GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002281-TA|BGIBMGA002281-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (241 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical pr...    31   0.98 
AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-li...    31   0.98 
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    30   1.7  
AF022976-13|AAC69078.1|  282|Caenorhabditis elegans Hypothetical...    27   9.2  
AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U28941-6|AAC71101.2| 1788|Caenorhabditis elegans Hypothetical
           protein F31D5.5 protein.
          Length = 1788

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 52  AGWGSTQKFSDGRAIGRTNTNSPSLLETDVVLISKKNCKKRWDPRYHNVIEEHMICAKDS 111
           A  G+T K +   A G TNT  P     + V IS K  K +       ++  H+ C  +S
Sbjct: 209 AATGTTDKTTSVAAGGTTNTPKPFTFLLEDVNISLKEGKTKGGSTKDVILSAHLSCEGES 268

Query: 112 LD-SEAMSNICAEHH 125
            + +  +SN   +++
Sbjct: 269 CEFTSTISNYAPDYY 283


>AY314774-1|AAQ84881.1| 1757|Caenorhabditis elegans methuselah-like
           protein MTH-1 protein.
          Length = 1757

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 52  AGWGSTQKFSDGRAIGRTNTNSPSLLETDVVLISKKNCKKRWDPRYHNVIEEHMICAKDS 111
           A  G+T K +   A G TNT  P     + V IS K  K +       ++  H+ C  +S
Sbjct: 178 AATGTTDKTTSVAAGGTTNTPKPFTFLLEDVNISLKEGKTKGGSTKDVILSAHLSCEGES 237

Query: 112 LD-SEAMSNICAEHH 125
            + +  +SN   +++
Sbjct: 238 CEFTSTISNYAPDYY 252


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 182 HGGPLVVGQGKTSVVIG-VISACMTKYLTNTCYGPFLYTSVWRY 224
           H  P+  G G + ++   V+ ACMTK+L+  C   FLY   W +
Sbjct: 95  HLFPVFRGIGVSQILFTMVVLACMTKFLSTLCL--FLYYYFWTF 136


>AF022976-13|AAC69078.1|  282|Caenorhabditis elegans Hypothetical
           protein R11G11.3 protein.
          Length = 282

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 217 LYTSVWRYRHLIECSINKEI 236
           ++ +VWRYRHL +  IN +I
Sbjct: 69  IFKAVWRYRHLSKGQINFQI 88


>AC006655-2|AAF39876.1|  208|Caenorhabditis elegans Hypothetical
           protein H10D18.4 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 53  GWGSTQKFSDGRAIGRTNTNSPSLLETDVVLISKKNCKKRWDPRYHNVIEEHMICAKDSL 112
           GW ST     G A G  +    +  ET  +    KNC K  D    N+ +  ++C  DS 
Sbjct: 119 GWTSTFLDEAGFATGIGHATQMAWAETSKIGCGIKNCGK--DANKKNMYKVAVVCQYDSA 176

Query: 113 DSEAMSNI 120
            +   S+I
Sbjct: 177 GNMMDSDI 184


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,380,227
Number of Sequences: 27539
Number of extensions: 267619
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 5
length of query: 241
length of database: 12,573,161
effective HSP length: 79
effective length of query: 162
effective length of database: 10,397,580
effective search space: 1684407960
effective search space used: 1684407960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)