GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002281-TA|BGIBMGA002281-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR009003|Peptidase, trypsin-like serine and
cysteine
         (241 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.83 
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   5.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor
          protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 13 VEDDF-NFQKRVKGCDYVPKMIAYNNQSEELEKP 45
          VE+ F NF K +    YV   +AYNN +  L  P
Sbjct: 43 VEESFTNFDKGINWRSYVVCDVAYNNVNNWLWTP 76


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 54  WGSTQKFSDGRAIGRTNTNSPSLLETDVVLISKKNCKKRWDPRYHNVIEEHMI 106
           +G T K        R  +  P ++ +     +  N    + P Y+N+I    I
Sbjct: 292 YGETSKERSRNRTEREKSKEPKIISSLSNNYNYNNYNNNYKPLYYNIINIEQI 344


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,353
Number of Sequences: 429
Number of extensions: 2936
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 241
length of database: 140,377
effective HSP length: 56
effective length of query: 185
effective length of database: 116,353
effective search space: 21525305
effective search space used: 21525305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)