GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002280-TA|BGIBMGA002280-PA|undefined
         (101 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   1.1  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    21   3.3  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    20   5.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 1.1
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 21  TFQYSRGWTNG---KRDGHKRDEL-RDEVLERILTPCQLDKLKYVLEGKPLNDRLFVPCD 76
           TF ++ GW NG   K      + L    +   + TP     ++  L  KP+ D    P  
Sbjct: 472 TFDFTNGWANGTLAKLSPKVLEPLYSGNLAVSVATPNDTSLVRGRLVAKPVADARDAPAP 531

Query: 77  YIEEEVN 83
           ++ +  N
Sbjct: 532 FLLKREN 538


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
          protein 18 protein.
          Length = 124

 Score = 20.6 bits (41), Expect = 3.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 39 DELRDEVLERILTPCQLDKLKYVLEGKPLNDRL 71
          D L +E L +    C LDK +   EGK L   +
Sbjct: 30 DILSNERLLKNYVNCLLDKGRCTPEGKKLKSTI 62


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 19.8 bits (39), Expect = 5.8
 Identities = 7/30 (23%), Positives = 18/30 (60%)

Query: 36  HKRDELRDEVLERILTPCQLDKLKYVLEGK 65
           H  + LR++   R +TP +++++  ++  K
Sbjct: 175 HVMNLLREQSRTRPITPKEIERMVQIIHKK 204


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.139    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,072
Number of Sequences: 317
Number of extensions: 839
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 101
length of database: 114,650
effective HSP length: 48
effective length of query: 53
effective length of database: 99,434
effective search space:  5270002
effective search space used:  5270002
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)