GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002280-TA|BGIBMGA002280-PA|undefined
         (101 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1192 + 10249316-10249431,10251263-10251279,10251890-102537...    28   1.5  
06_01_1190 + 10231166-10231222,10231318-10234122                       28   1.5  
09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130...    27   3.5  
05_01_0268 - 2053420-2053539,2053636-2053710,2053805-2053867,205...    27   3.5  
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318...    26   6.0  
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022...    25   8.0  

>06_01_1192 +
           10249316-10249431,10251263-10251279,10251890-10253797,
           10253880-10254492,10255390-10255392,10257635-10257713,
           10258177-10258236,10258536-10258586,10258800-10258948,
           10260937-10260985
          Length = 1014

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 28  WTNGKRDGHKRDELRDEVLERILTPCQLDKLKYVLEGKPLNDRLFVPCDYIEEEVNQPKR 87
           W    +  H+ + L+D ++ ++L P  LD+L   L+GK +  ++    +Y+ EE+ + KR
Sbjct: 136 WITVSQSFHRIELLKD-MIRQLLGPSSLDQLLQELQGKVV-VQVHHLSEYLIEELKE-KR 192

Query: 88  Y 88
           Y
Sbjct: 193 Y 193


>06_01_1190 + 10231166-10231222,10231318-10234122
          Length = 953

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 28  WTNGKRDGHKRDELRDEVLERILTPCQLDKLKYVLEGKPLNDRLFVPCDYIEEEVNQPKR 87
           W    +  H+ + L+D ++ ++L P  LD+L   L+GK +  ++    +Y+ EE+ + KR
Sbjct: 143 WITVSQSFHRIELLKD-MIRQLLGPSSLDQLLQELQGKVV-VQVHHLSEYLIEELKE-KR 199

Query: 88  Y 88
           Y
Sbjct: 200 Y 200


>09_06_0108 -
           20912236-20912364,20912470-20912601,20912718-20913071,
           20913161-20913407,20913489-20913565,20913971-20914045,
           20914118-20914219,20914329-20914447,20914861-20914984,
           20915081-20915131,20915247-20915345,20915839-20915949
          Length = 539

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 37  KRDELRDEVLERILTPCQLDKLKYVLEGKPLNDRLFV 73
           K +E + +V+++   P   D+ ++V E  P+ND+L +
Sbjct: 446 KGEEKKTKVIKKNRDPRWEDEFEFVCEEPPVNDKLHI 482


>05_01_0268 -
           2053420-2053539,2053636-2053710,2053805-2053867,
           2053977-2054093,2054332-2054436,2054559-2054768,
           2054858-2054983,2055061-2055114,2055198-2055278,
           2055419-2055526,2055579-2055719,2056396-2056629
          Length = 477

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 44  EVLERILTPCQLDKLKYVLEGK 65
           E+ ERI++PC  D L+Y L  K
Sbjct: 97  ELFERIVSPCFNDLLRYFLAAK 118


>12_01_0403 -
           3185897-3186931,3187200-3187311,3187425-3187735,
           3188112-3188324,3188834-3189052
          Length = 629

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 39  DELRDEVLERILTPCQLDKLKYVLEGKPLNDRLFV 73
           ++L D + ER+++         V EG P+++ LFV
Sbjct: 373 EQLLDAICERLVSSLSTKDAYIVREGDPVSEMLFV 407


>01_06_1149 -
           34901338-34901466,34901707-34901838,34901940-34902290,
           34902301-34902619,34902756-34902784,34903641-34903715,
           34903799-34903900,34904002-34904120,34904752-34904875,
           34904976-34905026,34905143-34905241,34905751-34905861
          Length = 546

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/37 (29%), Positives = 23/37 (62%)

Query: 37  KRDELRDEVLERILTPCQLDKLKYVLEGKPLNDRLFV 73
           K +E + +V+++   P   +++++V E  P ND+L V
Sbjct: 453 KGNEKKTKVIKKNRDPRWEEEIEFVCEDPPANDKLHV 489


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.139    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,623
Number of Sequences: 37544
Number of extensions: 102268
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 14,793,348
effective HSP length: 71
effective length of query: 30
effective length of database: 12,127,724
effective search space: 363831720
effective search space used: 363831720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)