Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002280-TA|BGIBMGA002280-PA|undefined
(101 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_19551| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.7
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 26 6.3
SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59) 26 6.3
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 26 6.3
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6) 26 6.3
SB_21399| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_40261| Best HMM Match : Glyco_transf_10 (HMM E-Value=5.5) 25 8.3
SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7) 25 8.3
>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1485
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 87 RYKGERNHELFDVF 100
R+KG RNHEL DVF
Sbjct: 761 RWKGGRNHELGDVF 774
>SB_19551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 24 YSRGWTNGKRDGHKRDELRDEVLERILTPCQLDKLKYVLEGKPLN 68
Y+ W DG E R ++ + +L P +L L+ VLE + L+
Sbjct: 225 YATSWEVDSDDGEGIQEKRRKINKILLDPNKLRALRVVLENQQLH 269
>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 30 NGKRDGHKRDELRDEVLERILTPCQLDKLKY 60
N ++D HKR L +EV + IL+ + D L Y
Sbjct: 136 NERQDKHKRKSLDEEVRQDILSWNRADSLLY 166
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 54 QLDKLKYVLEGKPLNDRLF----VPCDYIEEEVNQPKRYKGERNHEL 96
+L+KL L+ +P N + C+ +++EV Q +R E H L
Sbjct: 592 ELEKLVQSLDARPNNTKELEEYKAECEILQDEVAQYRRLSDEDRHRL 638
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 65 KPLNDRLFVPCDYIEEEV-NQPKR 87
+ L+ L +PCDY+ +V QPKR
Sbjct: 1716 RTLHYNLLLPCDYLMSDVITQPKR 1739
>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
Length = 421
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 65 KPLNDRLFVPCDYIEEEV-NQPKR 87
+ L+ L +PCDY+ +V QPKR
Sbjct: 160 RTLHYNLLLPCDYLMSDVITQPKR 183
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 65 KPLNDRLFVPCDYIEEEV-NQPKR 87
+ L+ L +PCDY+ +V QPKR
Sbjct: 989 RTLHYNLLLPCDYLMSDVITQPKR 1012
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 65 KPLNDRLFVPCDYIEEEV-NQPKR 87
+ L+ L +PCDY+ +V QPKR
Sbjct: 533 RTLHYNLLLPCDYLMSDVITQPKR 556
>SB_57666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 65 KPLNDRLFVPCDYIEEEV-NQPKR 87
+ L+ L +PCDY+ +V QPKR
Sbjct: 160 RTLHYNLLLPCDYLMSDVITQPKR 183
>SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6)
Length = 311
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 65 KPLNDRLFVPCDYIEEEV-NQPKR 87
+ L+ L +PCDY+ +V QPKR
Sbjct: 53 RTLHYNLLLPCDYLMSDVITQPKR 76
>SB_21399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 20 QTFQYSRGWTNGKRDGHKRDELRDEVLERI 49
+TF+ +RG N K G +RDEL + ER+
Sbjct: 120 KTFEMARG--NDKSKGQRRDELERKRDERV 147
>SB_40261| Best HMM Match : Glyco_transf_10 (HMM E-Value=5.5)
Length = 480
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 87 RYKGERNHELFDVF 100
R++G RNHEL DVF
Sbjct: 233 RWEGGRNHELGDVF 246
>SB_14335| Best HMM Match : DUF1315 (HMM E-Value=2.7)
Length = 1223
Score = 25.4 bits (53), Expect = 8.3
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 17 VTAQTFQYSRGWTNGKRDGHKRDELRDEV--LERILTPCQLDKLKYVLEGKPLNDRLFVP 74
VT ++ + SR W + G+ +L V L + P D + +G P F
Sbjct: 101 VTHKSAKESRRWLSEPSYGYWPQQLNFAVWILYELGAPLPCDS-PFTQKGNPYKKAAFER 159
Query: 75 -CDYIEEEVNQPKRYKGERNHELFDVF 100
C R+KG RNH L DVF
Sbjct: 160 LCIEFGLPRKPDFRWKGGRNHGLGDVF 186
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.139 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,749
Number of Sequences: 59808
Number of extensions: 130616
Number of successful extensions: 505
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 501
Number of HSP's gapped (non-prelim): 13
length of query: 101
length of database: 16,821,457
effective HSP length: 71
effective length of query: 30
effective length of database: 12,575,089
effective search space: 377252670
effective search space used: 377252670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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