GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002279-TA|BGIBMGA002279-PA|IPR010987|Glutathione
S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold,
IPR004045|Glutathione S-transferase, N-terminal, IPR004046|Glutathione
S-transferase, C-terminal
         (215 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    27   0.15 
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    25   0.34 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    23   2.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.6  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   7.4  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.8  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   9.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 17/76 (22%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 74  LVSKYGEEKHESMYPKDLKIRAIIDQMLYFDATILFPRLKTVIYSVVRGQGMSRQQIADI 133
           L+ +   E H+ +   ++    I ++ + F+A   FP   T+++SV++ Q + +QQ+ + 
Sbjct: 314 LIHQIQTEDHDIIDEIEMFSLQIANEQVEFNAAGFFPINYTLVFSVLK-QYVMQQQVKNF 372

Query: 134 QEAYDVLEIYLSKNIF 149
           +  + V  ++    IF
Sbjct: 373 R--HSVRSVFFLSEIF 386



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 74   LVSKYGEEKHESMYPKDLKIRAIIDQMLYFDATILFPRLKTVIYS 118
            L+ K    +HE +   ++    I+++   F+A   FP   T+++S
Sbjct: 1044 LIHKIETNEHEIIDKIEMFSLQILNERAEFNAAGFFPIDYTLVFS 1088


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 63  VIADSHAIITYLVSKYGEEKHESMYPKDLKIRAIIDQMLY 102
           ++  S+A+IT+L+    +  +E + P  L I+   D +L+
Sbjct: 319 ILGVSNAVITFLIVMVQKASYEKLSPVVLFIQVAADTVLF 358


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 74  LVSKYGEEKHESMYPKDLKIRAIIDQMLYFDATILFPRLKTVIYSVVRG 122
           L+ K    +HE +   ++    I+++   F+A   FP   T+++SV  G
Sbjct: 325 LIHKIETNEHEIIDKIEMFSLQILNERAEFNAAGFFPIDYTLVFSVSFG 373


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 24   LGIKAETREVTLPRRDHYSQEYLEKNPLHTV 54
            LG++     +      H S+EYL+  P+  V
Sbjct: 1299 LGVRTNITYIEETSEVHISKEYLQLEPIGLV 1329


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 24   LGIKAETREVTLPRRDHYSQEYLEKNPLHTV 54
            LG++     +      H S+EYL+  P+  V
Sbjct: 1299 LGVRTNITYIEETSEVHISKEYLQLEPIGLV 1329


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 74  LVSKYGEEKHESMYPKDLKIRAIIDQMLYFDATILFPRLKTVIYSV 119
           L+ +   E H+ +   ++    I ++ + F+A   FP   T+++SV
Sbjct: 345 LIHQIQTEDHDIIDEIEMFSLQIANEQVEFNAAGFFPINYTLVFSV 390


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 74  LVSKYGEEKHESMYPKDLKIRAIIDQMLYFDATILFPRLKTVIYSVVRG 122
           L+ K   E H+     ++    I ++ + F+A   F    T+++S++ G
Sbjct: 593 LIHKIDTEDHDIRDEIEMFSLQIANEQVEFNAAGFFAINYTLVFSILGG 641


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 74  LVSKYGEEKHESMYPKDLKIRAIIDQMLYFDATILFPRLKTVIYSVVRG 122
           L+ K   E H+     ++    I ++ + F+A   F    T+++S++ G
Sbjct: 318 LIHKIDTEDHDIRDEIEMFSLQIANEQVEFNAAGFFAINYTLVFSILGG 366


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,685
Number of Sequences: 317
Number of extensions: 1965
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 114,650
effective HSP length: 54
effective length of query: 161
effective length of database: 97,532
effective search space: 15702652
effective search space used: 15702652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)