GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002279-TA|BGIBMGA002279-PA|IPR010987|Glutathione
S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold,
IPR004045|Glutathione S-transferase, N-terminal, IPR004046|Glutathione
S-transferase, C-terminal
         (215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    55   9e-09
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    40   2e-04
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    40   3e-04
SPBC1539.10 |||ribosome biogenesis protein Nop16 |Schizosaccharo...    29   0.39 
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    29   0.69 
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    28   1.2  
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy...    27   2.8  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   2.8  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 54.8 bits (126), Expect = 9e-09
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 24  LGIKAETREVTLPRRDHYSQEYLEKNPLHTVPIL---EEDDLVIADSHAIITYLVSKYGE 80
           L +  ETR V   + +  S E+L  NP   VP L     +D  I +S AI+ YL  KY  
Sbjct: 25  LDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDT 84

Query: 81  EKHESMYPKDLKIRAIIDQMLYFDAT---ILFPRLK--TVIYSVVRGQGMSRQQIADIQE 135
           E+  S+ P+D      + Q L+F A+   I++ +    +V +  +    ++R +  +I+ 
Sbjct: 85  ERKISL-PRDHPEYYKVIQYLFFQASGQGIIWGQAGWFSVYHQELVISAITRYR-NEIKR 142

Query: 136 AYDVLEIYLSKNIFVAGNEFTVADISCVATLSSLDCVLPVDK 177
              VLE  L    ++  N FT+AD+S ++  + L+ +    K
Sbjct: 143 VLGVLEDILKDRDYLVANRFTIADLSFISWNNFLEIIFAEGK 184


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 10/167 (5%)

Query: 5   IYQTSVSPPARSALMVVNILGIKAETREVTLPRRDHYSQEYLEKNPLHTVPIL---EEDD 61
           +Y  +  P     ++ +  L +  E       + +   +E+L  NP   VP L   + +D
Sbjct: 6   LYSHAGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVDHKNND 65

Query: 62  LVIADSHAIITYLVSKYGEEKHESMYPKDLKIRAIIDQMLYFDAT---ILFPRLK--TVI 116
             I +S AI+ YL  KY  ++  S+   D +   +I Q L+F A+   +++ +       
Sbjct: 66  YTIWESDAILIYLADKYDTDRKISLSFDDPEYYKLI-QYLFFQASGQGVIWGQAGWFNFF 124

Query: 117 YSVVRGQGMSRQQIADIQEAYDVLEIYLSKNIFVAGNEFTVADISCV 163
           +       ++R +  +I+    VLE  L    ++  N++T+AD+S +
Sbjct: 125 HHEPVVSAVTRYR-NEIKRVLGVLEDILKDRDYLVANKYTIADLSFI 170


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 18/163 (11%)

Query: 45  YLEKNPLHTVPILEEDDLVIADSHAIITYLVSKYGEEKHESMYPKDLKIRAIIDQMLYFD 104
           Y + +PL   PI+ +D +   +S AI+ +LV KYG     S   +D+      +  ++F 
Sbjct: 42  YTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPS--EEDVAELEKYELWMHFS 99

Query: 105 ATILFPRL-------KTVIYSVVRGQGMSRQQIADIQEAY---------DVLEIYLSKNI 148
              L P +        +V  + +  + + RQ +  I+  Y         D ++ +L+ N 
Sbjct: 100 EASLMPFIWASHVLDLSVNMTPIFFRYIVRQFVNGIKSKYLSKETFLNLDYIDNHLASNE 159

Query: 149 FVAGNEFTVADISCVATLSSLDCVLPVDKKHVNVNRWWATLSN 191
           + AG +FT AD      + +        K + N+ RW   +S+
Sbjct: 160 YFAGEQFTAADPQMCFPIFAAQRDYLSQKPYKNIKRWMRVVSD 202


>SPBC1539.10 |||ribosome biogenesis protein Nop16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 65  ADSHAIITYLVSKYGEEKHESMYPKDLKIRA 95
           A  HA I  L++KYG E  ESM  KD+K+ +
Sbjct: 161 AFEHAYIQRLINKYGTEDFESM-AKDVKLNS 190


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 148 IFVAGNEFTVADISCVATLSS--LDCV---LPVDKKHVNVNRWWATLSNEKW 194
           I VAGN   +     +A +    LDC    +P ++K +    WWA   NEKW
Sbjct: 407 INVAGNWSILTRAIALAQILGFHLDCSEWQIPKEEKILRNRVWWALFVNEKW 458


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 54  VPILEE--DDLVIADSHAIITYLVSKYGEEKHESMYPKDLKIRAIIDQMLYFDATILFPR 111
           VPIL E  D L   D+ + + +++ +Y EE  +S+   +  ++   D+ L    T+L   
Sbjct: 429 VPILYENLDSLDEPDAKSAVIWILGQYAEEIEDSITLLNDYLKGFFDEPLEIQLTLLTAV 488

Query: 112 LKTVI 116
           +K  +
Sbjct: 489 IKVFL 493


>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)

Query: 41  YSQEYLEKNPLHTVPILEEDD-LVIADS 67
           Y++  ++++PL T PIL +D+  +IADS
Sbjct: 260 YAKNLVDRSPLDTRPILSDDNSSLIADS 287


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 173 LPVDKKHVNVNRWWATLSNEKWY 195
           +P ++K +    WWA    +KWY
Sbjct: 363 IPNEEKTIRKRIWWAIFIADKWY 385


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 973,884
Number of Sequences: 5004
Number of extensions: 40401
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 2,362,478
effective HSP length: 70
effective length of query: 145
effective length of database: 2,012,198
effective search space: 291768710
effective search space used: 291768710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)