GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002279-TA|BGIBMGA002279-PA|IPR010987|Glutathione
S-transferase, C-terminal-like, IPR012336|Thioredoxin-like fold,
IPR004045|Glutathione S-transferase, N-terminal, IPR004046|Glutathione
S-transferase, C-terminal
         (215 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 46   2e-05
SB_41927| Best HMM Match : GST_C (HMM E-Value=2.4e-06)                 35   0.045
SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23)               28   5.1  
SB_42824| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 49  NPLHTVPILEEDDLVIADSHAIITYLVSKYGEEKHESMYPKDLKIRAIIDQMLYFDATIL 108
           +P +T+P+LE  +     S+ II YL +       + +Y  DL  R  +DQ L    T  
Sbjct: 44  SPFNTLPLLETKEGTFFSSNTIIRYLAAS-----SDKLYGSDLFQRGQVDQWLDI-TTCD 97

Query: 109 FPRLKTVIYSVVRGQGMSRQQI-ADIQEAYDVLEIYLSKNIFVAGNEFTVADISCVATLS 167
           F      +     G+ +   +I ADI +    +E +L+   F+ G+  T+AD S   +++
Sbjct: 98  FEAAVAAVAIAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIA 157

Query: 168 SLDCVLPVD--KKHVNVNRWWATL 189
            +   L  +  K + N+  W+  L
Sbjct: 158 VILTSLGDEDRKPYQNIVSWYTAL 181


>SB_41927| Best HMM Match : GST_C (HMM E-Value=2.4e-06)
          Length = 174

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 132 DIQEAYDVLEI-YLSKNIFVAGNEFTVADISCVATLSSLDCV-LPVDKKHVNVNRWWATL 189
           ++ +  +VLE  YL KN F+ G E TVAD      L   + V L +      V  W+  +
Sbjct: 53  ELTKQLEVLESHYLKKNPFLCGKELTVADTYVATVLCQAEWVNLEIPSLWPRVFAWFTKV 112

Query: 190 -SNEKWY 195
            S  KWY
Sbjct: 113 KSQPKWY 119


>SB_19234| Best HMM Match : Extensin_2 (HMM E-Value=0.23)
          Length = 880

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 12 PPARSALMVVNILGIKAETREVTLPRRDHYSQ-EYLEKNPLHTVPILEEDDLVIADSHAI 70
          PP+    ++ ++ G+   T       +DH  Q ++L++  + T P LE+ ++V  +S A 
Sbjct: 20 PPSEMHSLICDVGGVDGCTYHF-YAHKDHQDQCKWLQQ--MQTAPNLEQQNIVAHNSAAG 76

Query: 71 ITYLVS---KYGEE 81
          ++Y V+   K GEE
Sbjct: 77 VSYEVARDIKQGEE 90


>SB_42824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 5/95 (5%)

Query: 102 YFDATILFPRLKTVIYSVVRGQGMSRQQIADIQEAYDVLEIYLSKNIFVAGNEFTVADIS 161
           YF A   +P+L+++  SV       R ++  +   + V E+  +      GN     DI 
Sbjct: 57  YFKAQHQYPQLESIALSVHEESTAYRNEVGPLDYEFSVPEVNNALKKLNKGNAPGFYDIL 116

Query: 162 CVATLSSLDCVLPVDKKHVNVNRWWATLSNEKWYK 196
               L + D +LP       VN + A L N +W K
Sbjct: 117 NEVLLIASDRLLP-----TLVNIFNAILRNGQWPK 146


>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 556

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%)

Query: 87  YPKDLKIRAIIDQMLYFDATILFPRLKTVIYSVVRGQGMSRQQIADIQEAYDVLEIYLSK 146
           YPK +K  +  ++M+  D    FP           GQG +   +  +   + V+++    
Sbjct: 69  YPKLIKANSACERMIKRDIARTFPDHSFFKDKDGIGQG-TLFNVIKVTCVFIVIKVTCVF 127

Query: 147 NIFVAGNEFTVADISCVATLSSLDCVLPVDK 177
           N+      F V  ++CV  +  + CV  V K
Sbjct: 128 NVIKVTCVFNVIKVTCVFNVIKVTCVFNVIK 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,684,691
Number of Sequences: 59808
Number of extensions: 256600
Number of successful extensions: 577
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 16,821,457
effective HSP length: 79
effective length of query: 136
effective length of database: 12,096,625
effective search space: 1645141000
effective search space used: 1645141000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)