GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002278-TA|BGIBMGA002278-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   1.1  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   2.5  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    26   3.3  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   4.3  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   5.7  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.7  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   7.5  
SPBC216.06c |swi1||replication fork protection complex subunit S...    24   9.9  

>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 92  IKMPELHWWNWKDLALARVETPYNFHDDSYLKYCSYKPNLIKINY 136
           IK P +HW +WK +  A +E     H+    K+ S   ++IK+ Y
Sbjct: 423 IKTPVIHWKDWKVIRNAEIERGLR-HESLSEKFRS-NEDMIKLIY 465


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 67  DLDNDECTKRFRKRVLSYCIQKDYMIK 93
           D D +  T  FR+RV   C+ +DY +K
Sbjct: 272 DKDREPTTLTFRERVDYSCLDEDYNLK 298


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 87  QKDYMIKMPELHWW 100
           +KD  +K+PE+ WW
Sbjct: 317 RKDVSVKIPEIFWW 330


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 41  LTAASCLTDVSYVYAIAGYRKYVKTEDLDNDECTKRFRKRVLSYCIQKDYMIKMP 95
           LT AS  +++ Y Y+     KY K  D     C     + + SYC    Y+ K+P
Sbjct: 146 LTVASPKSNLYYRYSSES-PKYAKILD-----CPDEILQLIFSYCYDASYIEKLP 194


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 63  VKTEDLDNDECTKRFRKRVLSYCIQKDY 90
           +K ++L+ +E T++ RK   SY    DY
Sbjct: 953 LKDKELELEELTRKIRKLKFSYLSSMDY 980


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)

Query: 95  PELHWWNWKDLALARVETPYN-FHDDSYLKYCSYKPNLIKINYNPEFLTPGTDVVAL 150
           P LH  N+ D +     T Y  F+D ++     YKPN I ++  PE +    D V +
Sbjct: 232 PILHLMNFDDYS-----TSYELFYDRNFPLAKKYKPNSIYLHRLPESIPTPVDSVKI 283


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 59  YRKYVKTEDLDNDECTKRFRKRVLSYCIQKDYMIKMPELHWWNWK 103
           ++K      LD ++CT +FRK ++     ++ ++   E+   N K
Sbjct: 78  FKKGTDVAILDFNQCTLKFRKSIVELAKARNMLLMFVEVVCTNQK 122


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)

Query: 63  VKTEDLDNDECTKRFRKR 80
           +KT+ LD  +  KRFRKR
Sbjct: 292 IKTDGLDELDSHKRFRKR 309


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,013
Number of Sequences: 5004
Number of extensions: 37378
Number of successful extensions: 99
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 8
length of query: 165
length of database: 2,362,478
effective HSP length: 68
effective length of query: 97
effective length of database: 2,022,206
effective search space: 196153982
effective search space used: 196153982
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)