Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002278-TA|BGIBMGA002278-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
(165 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0076 - 540886-541527,542173-542754 29 2.5
02_05_0941 + 32953065-32953089,32954252-32954406,32954486-329545... 28 3.3
11_06_0703 + 26444128-26446215,26446525-26447226 27 5.7
08_02_0009 + 11216532-11218687,11220727-11225998 27 5.7
08_02_0003 + 11180421-11180757,11180773-11185715 27 5.7
08_02_0002 + 11173365-11173512,11173528-11178470 27 5.7
04_03_0118 - 11474060-11475298 27 5.7
03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459 27 7.5
>08_01_0076 - 540886-541527,542173-542754
Length = 407
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/57 (21%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 38 KFILTAASCLTDVS----YVYAIAGYRKYVKTEDLDNDECTKRFRKRVLSYCIQKDY 90
+F+L + SC+ + Y Y I +V++ ++D +C R+ +R+ + + +
Sbjct: 222 RFVLLSESCIPVFNFPTVYEYLINSAHSFVESYNIDTPQCAGRYNRRMAPHILPSQW 278
>02_05_0941 +
32953065-32953089,32954252-32954406,32954486-32954587,
32955089-32955140,32955237-32955349,32955542-32955610,
32955942-32956049,32956517-32956661,32957245-32957476,
32957567-32957853,32957951-32958087,32958520-32958667,
32959464-32959595,32960239-32960367,32960707-32960834,
32960911-32961075,32961462-32961587,32962088-32962161,
32962285-32962534,32962875-32963054,32963128-32963361,
32964771-32964840,32965065-32965177,32965403-32965511,
32965639-32965688,32965823-32965889,32966131-32966203,
32966393-32966448,32966729-32966831,32967377-32967458,
32967717-32967779,32967918-32967977,32968356-32968448,
32968561-32968623,32968699-32968797
Length = 1363
Score = 28.3 bits (60), Expect = 3.3
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 81 VLSYCIQKDYMIK-MPELHWWNWKDLALARVETPYNFHDDSYLKYCSYK-PNLIKINYNP 138
V + K Y+ + +HW ALA E Y+ + S Y ++K NL K
Sbjct: 175 VFGQMVMKGYIYRGRKPVHWSPSSRTALAEAELEYSENHISKSMYAAFKITNLSKPGLLE 234
Query: 139 EFLTPGTDVVALGWGTTKYYRPVN 162
EFL ++ W TT + P N
Sbjct: 235 EFL---PNLCLAIWTTTPWTIPAN 255
>11_06_0703 + 26444128-26446215,26446525-26447226
Length = 929
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 41 LTAASCLTDVSYVYAIAGYRKYVKTEDLDNDECTKRFRKRVLSYC 85
L AASCL V + +++G+ + E L+ + RK +S C
Sbjct: 839 LVAASCLKSVKDLPSLSGFLSVCRCEGLERVTELPKVRKLFVSVC 883
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 30 CGGCIVHP--KFILTAASCLTDVSYVYAIAGYRKYVKTEDLDNDECTKRFRKRVLSYCIQ 87
C CI +P + +T + CL A +K+ K +L++DE T R RVL +
Sbjct: 1623 CAFCIYYPSQENRVTCSICLKQACAECIKANKQKWRKEIELESDEKTLSSRVRVLENRLN 1682
Query: 88 K 88
K
Sbjct: 1683 K 1683
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 30 CGGCIVHP--KFILTAASCLTDVSYVYAIAGYRKYVKTEDLDNDECTKRFRKRVLSYCIQ 87
C CI +P + +T + CL A +K+ K +L++DE T R RVL +
Sbjct: 907 CAFCIYYPSQENRVTCSICLKQACAECIKANKQKWRKEIELESDEKTLSSRVRVLENRLN 966
Query: 88 K 88
K
Sbjct: 967 K 967
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 30 CGGCIVHP--KFILTAASCLTDVSYVYAIAGYRKYVKTEDLDNDECTKRFRKRVLSYCIQ 87
C CI +P + +T + CL A +K+ K +L++DE T R RVL +
Sbjct: 844 CAFCIYYPSQENRVTCSICLKQACAECIKANKQKWRKEIELESDEKTLSSRVRVLENRLN 903
Query: 88 K 88
K
Sbjct: 904 K 904
>04_03_0118 - 11474060-11475298
Length = 412
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 38 KFILTAASCLTDVS----YVYAIAGYRKYVKTEDLDNDECTKRFRKRVLSYCIQKDY 90
+F+L + SC+ + Y Y + + YV++ ++D +C R+ R+ +++ +
Sbjct: 227 RFVLASESCVPVFNFPTVYEYLVNSAQSYVESYNIDVPQCAGRYNPRMAPDVLEEQW 283
>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
Length = 341
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 66 EDLDNDECTKRFRKRVLSYCIQKDYM 91
EDLDN+ +RFR+R + +DY+
Sbjct: 233 EDLDNEVSYERFRRRERRGVVARDYI 258
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.139 0.468
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,251,534
Number of Sequences: 37544
Number of extensions: 208708
Number of successful extensions: 467
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 8
length of query: 165
length of database: 14,793,348
effective HSP length: 77
effective length of query: 88
effective length of database: 11,902,460
effective search space: 1047416480
effective search space used: 1047416480
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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