GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002278-TA|BGIBMGA002278-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (165 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    34   0.058
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    32   0.18 
AF040650-5|AAB95008.1|  325|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z68879-7|CAA93088.2|  207|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF010241-1|AAB65419.1|  207|Caenorhabditis elegans glutathione S...    29   2.2  
Z93385-8|CAB07643.1|  702|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z81114-7|CAB03290.1|  702|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z49968-11|CAA90264.1|  880|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical ...    27   6.7  
AC024200-17|AAF36002.2|  432|Caenorhabditis elegans Hypothetical...    27   6.7  
AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
          protein F48E3.4 protein.
          Length = 279

 Score = 33.9 bits (74), Expect = 0.058
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 3  PAFWERCQLAVYLVKAEKSIMNYTAWLCGGCIVHPKFILTAASCLTD 49
          PA WER Q  V ++  +  + N +   C G ++ P  +LT++ C  D
Sbjct: 22 PAKWERHQYLVKVLTKDTKLKNIST--CTGTLLSPSVVLTSSKCFPD 66


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 30  CGGCIVHPKFILTAASCLT----DVSYVYAIAGYR 60
           CGG ++ P F+LTAA C        SY   + G+R
Sbjct: 84  CGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHR 118


>AF040650-5|AAB95008.1|  325|Caenorhabditis elegans Hypothetical
           protein T04B8.2 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 56  IAGYRKYVKTEDLDNDECTKRFRKRVLSYCIQK---DY--MIKMPELHWWNWKDLAL 107
           I G   Y+ TED++        +   L+ C+QK   D+  ++ +P L +W   DL L
Sbjct: 146 ILGDNSYITTEDMEFILKNFDLKYEFLTRCLQKTMIDFKLLVNLPRLEFWKDSDLTL 202


>Z68879-7|CAA93088.2|  207|Caenorhabditis elegans Hypothetical
           protein K08F4.11 protein.
          Length = 207

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 67  DLDNDECTKRFRKRVLSYCIQKDYMIKMPE 96
           D++ND+  K FR++++     K+++ K PE
Sbjct: 175 DIENDKLLKEFREKIIETPKLKEWLAKRPE 204


>AF010241-1|AAB65419.1|  207|Caenorhabditis elegans glutathione
           S-transferase protein.
          Length = 207

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 67  DLDNDECTKRFRKRVLSYCIQKDYMIKMPE 96
           D++ND+  K FR++++     K+++ K PE
Sbjct: 175 DIENDKLLKEFREKIIETPKLKEWLAKRPE 204


>Z93385-8|CAB07643.1|  702|Caenorhabditis elegans Hypothetical
           protein M01E5.6 protein.
          Length = 702

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 125 CSYKPNLIKINYNPEFLTPGTDVVAL 150
           C  + N  +I YNP FL  G  VVAL
Sbjct: 106 CFVEVNRPEIKYNPAFLVKGNVVVAL 131


>Z81114-7|CAB03290.1|  702|Caenorhabditis elegans Hypothetical
           protein M01E5.6 protein.
          Length = 702

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 125 CSYKPNLIKINYNPEFLTPGTDVVAL 150
           C  + N  +I YNP FL  G  VVAL
Sbjct: 106 CFVEVNRPEIKYNPAFLVKGNVVVAL 131


>Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 40  ILTAASCLTDVSYVYAIAGYRKYVKT 65
           +LT  SCL   +Y Y ++GY+  ++T
Sbjct: 75  LLTGLSCLPWFTYYYTLSGYKNDLQT 100


>Z49968-11|CAA90264.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 61  KYVKTEDLDNDECTKRFRKRVLSYCIQKDYMIKMPELHWWNWKDLALARVETPYNFHDDS 120
           K+VKT  L +      F   V++   + DY +    +HW N +++A + V    +FH  +
Sbjct: 376 KHVKTLRLSSSVVENYFESEVITK--KADYGL----MHWLNVQEIAYSLVLYQCDFHKTN 429

Query: 121 YLKYC 125
           + + C
Sbjct: 430 WTRRC 434


>Z49966-8|CAA90246.1|  880|Caenorhabditis elegans Hypothetical
           protein M110.7 protein.
          Length = 880

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 61  KYVKTEDLDNDECTKRFRKRVLSYCIQKDYMIKMPELHWWNWKDLALARVETPYNFHDDS 120
           K+VKT  L +      F   V++   + DY +    +HW N +++A + V    +FH  +
Sbjct: 376 KHVKTLRLSSSVVENYFESEVITK--KADYGL----MHWLNVQEIAYSLVLYQCDFHKTN 429

Query: 121 YLKYC 125
           + + C
Sbjct: 430 WTRRC 434


>AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 40  ILTAASCLTDVSYVYAIAGYRKYVKT 65
           +LT  SCL   +Y Y ++GY+  ++T
Sbjct: 75  LLTGLSCLPWFTYYYTLSGYKNDLQT 100


>AC024200-17|AAF36002.2|  432|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.1 protein.
          Length = 432

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 108 ARVETPYNFHDDSYLKYCSYKPNLIKINYNPEFLTPGTDVV 148
           A ++T YN  D  Y+   +  P L  I  N   ++PG D+V
Sbjct: 171 AELKTKYNLRDRCYIGNTTMDPELSFIQSNLAMISPG-DIV 210


>AL132895-1|CAC14399.1|  601|Caenorhabditis elegans Hypothetical
           protein Y59A8A.1 protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 71  DECTKRFRKRVLSYCIQKDYMIKMPELHWWNWKDLAL 107
           DE  + + + +  YC Q  + I M    W NW ++A+
Sbjct: 215 DEAIRLYSRGIRDYCTQLKHSINM----WINWMEVAI 247


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.139    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,654,500
Number of Sequences: 27539
Number of extensions: 197412
Number of successful extensions: 505
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 13
length of query: 165
length of database: 12,573,161
effective HSP length: 76
effective length of query: 89
effective length of database: 10,480,197
effective search space: 932737533
effective search space used: 932737533
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)