GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002278-TA|BGIBMGA002278-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (165 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    33   0.001
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 33.5 bits (73), Expect = 0.001
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 13/129 (10%)

Query: 29  LCGGCIVHPKFILTAASCLTDVSYVYAIAGYRKYVKTEDLDNDECTKRFRKRVLSYCIQK 88
           +CG  I+  +++LTAA C+ D +         ++  +   + +        +V+   I  
Sbjct: 187 ICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVI---IHP 243

Query: 89  DYMIKMPELHWWNWKDLALARVETPYNFHDDSYLKYCSYKPNLIKINYNPEFLTPGTDVV 148
            Y I   E   W   D+AL + E    F D          P  +   +  +    G+DV 
Sbjct: 244 KYDI--IEKDDWQINDIALLKTEKDIKFGD-------KVGPACLPFQHFLDSFA-GSDVT 293

Query: 149 ALGWGTTKY 157
            LGWG T +
Sbjct: 294 VLGWGHTSF 302


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 77  FRKRVLSYCIQKDY 90
           FRKR L + I+ DY
Sbjct: 263 FRKRTLPHFIKDDY 276


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.468 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,027
Number of Sequences: 429
Number of extensions: 2544
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 165
length of database: 140,377
effective HSP length: 53
effective length of query: 112
effective length of database: 117,640
effective search space: 13175680
effective search space used: 13175680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)