GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002277-TA|BGIBMGA002277-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (108 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   3.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    24   6.0  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    23   8.0  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    23   8.0  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    23   8.0  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    23   8.0  

>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 1   MSIPFPDLAFKILTWLGYS---NSA-FNPIIYSIFNTEFREAFKKILTSRY 47
           +SIP  ++ F  LTW  Y+   NS     I++  +N    + F K     Y
Sbjct: 200 ISIPDDEVEFCFLTWFEYTMEQNSVELLDIVFGFWNNIIEKRFSKSFIDSY 250


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 59  NTPTRNDNFVTDYGTKTLVVRRSGSLGLSGVDPTPRSSAESVR 101
           N P+ + N  TD  T+T  V  S S  LSG      +S+ S R
Sbjct: 251 NKPSTDIN-TTDPATQTTQVSASNSPALSGSSTPSNTSSRSNR 292


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 49  PCCGYQTVRANTPTRNDNFVTDYGTKTLVVRRSGSLGLSGVDPTPR 94
           P   Y    +NTPT+      D+ + T + RRS    LS    TPR
Sbjct: 84  PFLDYHHSTSNTPTKKKKDSFDHASVTSLHRRS----LSSNTSTPR 125


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 45  SRYPPCCGYQTVRANTPTRNDNFVTDYGTKTLVVR 79
           S+  PC    T + NTP  ++     YG + + VR
Sbjct: 465 SQRAPCIMTPTYKTNTPNLDEKRREFYGKRVIGVR 499


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 6   PDLAFKILTWLGYSNSAFNPIIYSIFNTEFREAFKKILTS 45
           PDL+ + L  L  +   FN    S F T F E F K  +S
Sbjct: 717 PDLSLEKLPTLEINT--FNCPAISYFETSFDECFSKFASS 754


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 36  REAFKKILTSRYPPCCGYQTVRANTPTRNDNFVTDYGTKTLVVRRSGSLGLS 87
           +E    +LT  +    G+Q VR     R   FV     +   V ++G+ G+S
Sbjct: 183 QEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMS 234


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,197
Number of Sequences: 5004
Number of extensions: 20852
Number of successful extensions: 43
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 6
length of query: 108
length of database: 2,362,478
effective HSP length: 64
effective length of query: 44
effective length of database: 2,042,222
effective search space: 89857768
effective search space used: 89857768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)