GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002277-TA|BGIBMGA002277-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (108 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    26   7.2  
02_01_0490 + 3541056-3542276                                           25   9.6  
01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191           25   9.6  

>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 73  TKTLVVRRSGSLGLSGVDPTPRSSAESVRPLR 104
           TK+  +R SGS   S VD T RSS  S  P+R
Sbjct: 127 TKSKPIRISGS---STVDNTQRSSRSSASPIR 155


>02_01_0490 + 3541056-3542276
          Length = 406

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 6   PDLAFKILTWLGYSNSAFNPIIYS----IFNTEFREAF--KKILTSRYPPC---CGYQTV 56
           P+L   +   +  +   F+P ++S      ++ +RE    KK+ T   P         T 
Sbjct: 96  PELVKAVRPAVAVAAEVFDPYVFSPKAPTCSSRWRELLRLKKVQTPTKPSASTSASPSTA 155

Query: 57  RANTPTRNDNFVTDYGTKTLVVRRSGSLGLSGVDPTPRSSAESVR 101
            A TP+R+ N       K L+++R+G    SG   +  S A  +R
Sbjct: 156 TAATPSRSSNSSAARSLKLLLLQRNGGRA-SGAAASDLSVAPLLR 199


>01_01_0237 - 1972699-1972796,1973618-1974334,1975387-1976191
          Length = 539

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 43  LTSRYPPCCGYQTVRANTPTRN 64
           L  ++PP CGY+T +     RN
Sbjct: 302 LAGKHPPECGYRTFQVTCDHRN 323


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,879
Number of Sequences: 37544
Number of extensions: 116032
Number of successful extensions: 233
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 4
length of query: 108
length of database: 14,793,348
effective HSP length: 72
effective length of query: 36
effective length of database: 12,090,180
effective search space: 435246480
effective search space used: 435246480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)