Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002276-TA|BGIBMGA002276-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(72 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 0.92
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 24 2.1
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 24 2.8
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 24 2.8
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 23 3.7
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo... 23 3.7
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 23 3.7
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 23 6.5
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|... 23 6.5
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 22 8.6
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 22 8.6
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 0.92
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 4 NRTKSVRTRVHTHVHSSPYHVSDHKAAI 31
NR K+++T+V +V S HVS++ I
Sbjct: 384 NRAKNIKTKVSRNVVSVDRHVSEYVRTI 411
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 24.2 bits (50), Expect = 2.1
Identities = 10/24 (41%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 12 RVHTHVHSSPYHVSDHKAAITVGI 35
R +++SSP++V +H AAIT+ +
Sbjct: 211 RFSFYLNSSPFNVKEH-AAITIAV 233
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 23.8 bits (49), Expect = 2.8
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 39 VFLLCWVPFFCVNIVAAFCKTCIPGHAVR 67
+FLL W C++I+ A C C+ ++R
Sbjct: 63 LFLLVWQKEICLSII-AICFACLLSPSLR 90
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 23.8 bits (49), Expect = 2.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 37 MGVFLLCWVPFFCVNIVAAF 56
+G+ CW+PF V ++ F
Sbjct: 320 IGIGTACWLPFLIVMVIYLF 339
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 23.4 bits (48), Expect = 3.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 3 DNRTKSVRTRVHTHVHSSPYHVSDHKAAITVGIIMGV 39
+N + + H S P H+S H + +T GI+ G+
Sbjct: 221 ENEVQEQPSISHDTFLSLPCHISMHTSYMTQGILEGL 257
>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 23.4 bits (48), Expect = 3.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 31 ITVGIIMGVFLLCWVPFFCVNIVA 54
+TVG+I G FL + F V++V+
Sbjct: 17 LTVGLIAGAFLYSLIYFVDVDLVS 40
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 23.4 bits (48), Expect = 3.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 4 NRTKSVRTRVHTHVHSSPYHVSDHKAAI 31
NR K+++T V ++ S HVS + AI
Sbjct: 385 NRAKNIKTEVLRNMISVDRHVSQYVKAI 412
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 22.6 bits (46), Expect = 6.5
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 1 MPDNRTKSVRTRVHTHVHSSPYHVSDHKAAITVGIIMGVF 40
M N + ++H S +++ ++ +G+IMGVF
Sbjct: 287 MITNPARQAGWKLHNFEDSKDVLITNFHPSMPLGLIMGVF 326
>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 145
Score = 22.6 bits (46), Expect = 6.5
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 17 VHSSPYHVSDHKAAITVGI 35
+HS P+H+S H + I
Sbjct: 38 IHSIPFHISTHLTSCQANI 56
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 22.2 bits (45), Expect = 8.6
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 15 THVHSSPYHVSDHKAAITVGIIMGVFLLCWVPFFCVNIVAAFCK 58
++VH P + +G I FL FFC + + F K
Sbjct: 530 SYVHRLPEEIRQTVLDALLGSIHYSFLFVSFMFFCAFVCSMFIK 573
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 22.2 bits (45), Expect = 8.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 20 SPYHVSDHKAAITVGIIMG 38
SP H+S AA+ I++G
Sbjct: 191 SPVHISSGMAALAYSIVIG 209
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.332 0.140 0.475
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,463
Number of Sequences: 5004
Number of extensions: 9430
Number of successful extensions: 33
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 11
length of query: 72
length of database: 2,362,478
effective HSP length: 52
effective length of query: 20
effective length of database: 2,102,270
effective search space: 42045400
effective search space used: 42045400
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 45 (22.2 bits)
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