Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002276-TA|BGIBMGA002276-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(72 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0297 - 11911699-11911772,11911987-11912072,11912245-119123... 26 3.2
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513... 26 3.2
02_05_0211 - 26800089-26800439,26800458-26800649,26800721-268007... 26 3.2
09_04_0650 - 19214589-19215106,19215839-19215935,19216100-192161... 26 4.3
11_03_0038 - 9142692-9143083,9143665-9143686,9143763-9143806,914... 25 5.6
05_07_0239 - 28599452-28599564,28599685-28599799,28600051-286001... 25 5.6
05_07_0152 + 28044733-28045032,28045131-28045220,28045770-280458... 25 5.6
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 25 5.6
01_07_0011 - 40435741-40436983,40437432-40437439,40438586-40438624 25 5.6
05_01_0234 - 1743784-1744017,1748103-1749068 25 7.5
09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917 25 9.9
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 25 9.9
>05_03_0297 -
11911699-11911772,11911987-11912072,11912245-11912332,
11912592-11912719,11913540-11913961,11931803-11932423
Length = 472
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 46 PFFCVNIVAAFCKTCIPGHAVRIKRE 71
P C+ AAF KT IP V +K++
Sbjct: 129 PITCLEFTAAFRKTHIPSGVVSLKKK 154
>03_06_0125 +
31850858-31850905,31851032-31851109,31851221-31851337,
31851346-31851642,31852498-31852509,31852737-31852822,
31853516-31853660,31853767-31853862,31854333-31854424,
31854696-31854797,31854891-31855037,31855116-31855266,
31855418-31855480,31855570-31855806,31856081-31856185,
31856263-31856376,31856459-31857037,31857279-31857286,
31857858-31858004,31858077-31858203
Length = 916
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 4 NRTKSVRTRVHTHVHSSPYHVSDHKAAI 31
+R K ++T VH ++ HV D+K I
Sbjct: 447 DRAKEIKTHVHKNIGHLDTHVEDYKRMI 474
>02_05_0211 -
26800089-26800439,26800458-26800649,26800721-26800792,
26800941-26801126
Length = 266
Score = 26.2 bits (55), Expect = 3.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 48 FCVNIVAAFCKTCIPGHA 65
FCV+ AA C+ C+P A
Sbjct: 39 FCVDCAAALCRHCLPHDA 56
>09_04_0650 -
19214589-19215106,19215839-19215935,19216100-19216189,
19216323-19216436,19217126-19217201,19217329-19217618
Length = 394
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 3 DNRTKSVRTRVHTHVHSSP 21
DN + S+ V THVHS+P
Sbjct: 265 DNNSNSLSDAVATHVHSTP 283
>11_03_0038 -
9142692-9143083,9143665-9143686,9143763-9143806,
9143959-9144133
Length = 210
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 5 RTKSVRTRVHTHVHSSPYHVSDHKAAITVGIIMGVFLLCWVPFFCVNIVAAFCKTCI 61
R SV T ++PY+ S K + ++ GV L C V++ F C+
Sbjct: 32 RACSVCTAARVAREAAPYYGSSEKRRYGMILMYGVILNCRRTMQMVHLTVFFFPACV 88
>05_07_0239 -
28599452-28599564,28599685-28599799,28600051-28600116,
28600270-28600329,28600571-28600617,28601118-28601202,
28601554-28601646,28601727-28601791,28601942-28602017,
28602110-28602175,28603082-28603141,28603400-28603489,
28603594-28603893
Length = 411
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 25 SDHKAAITVGIIMGVFLLCWVPFFCVNIVAAF-CKTCIPG 63
S ++ ++T+GI++ L +VP+ ++++ C IPG
Sbjct: 169 SVNQLSVTIGILLAYLLGMFVPWRILSVLGILPCSILIPG 208
>05_07_0152 +
28044733-28045032,28045131-28045220,28045770-28045829,
28045912-28045977,28046161-28046226,28046330-28046405,
28046721-28046785,28046879-28046971,28047302-28047322,
28047600-28047692,28047939-28047998,28048157-28048222,
28048314-28048373,28048498-28048612,28048738-28048850
Length = 447
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 25 SDHKAAITVGIIMGVFLLCWVPFFCVNIVAAF-CKTCIPG 63
S ++ ++TVGI++ L +VP+ + ++ C IPG
Sbjct: 191 SVNQLSVTVGILLAYLLGMFVPWRLLAVIGILPCTVLIPG 230
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 25 SDHKAAITVGIIMGVFLLCWVPFFCVNIVAAF-CKTCIPG 63
S ++ ++T+GI++ L +VP+ + ++ + C IPG
Sbjct: 192 SVNQLSVTIGILLAYLLGMFVPWRLLAVIGSIPCTLLIPG 231
>01_07_0011 - 40435741-40436983,40437432-40437439,40438586-40438624
Length = 429
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 21 PYHVSDHKAAITVGIIMGVFLLCWVPFFCVNI 52
P H++DH A G +M V LLC CV I
Sbjct: 305 PLHLTDHTLAEFQGRVMLVGLLCKNAATCVCI 336
>05_01_0234 - 1743784-1744017,1748103-1749068
Length = 399
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 41 LLCWVPFFCVNIVAAFCKTCIPG 63
LLC +P F V++ C+ C G
Sbjct: 168 LLCILPLFLVSLPLHMCRCCAAG 190
>09_04_0143 + 15056435-15056732,15056808-15057417,15057839-15057917
Length = 328
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 48 FCVNIVA-AFCKTCIPGH 64
F VN+ + AFCK+CI G+
Sbjct: 131 FLVNVCSHAFCKSCIGGY 148
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 1 MPDNRTKSVRTRVHT--HVHSSPYHVSDHKAAITVGIIMGVFLL 42
+P + T +V T + + ++S VS KA + VG+++GV +L
Sbjct: 574 IPADFTPTVSTSISPEGNNNTSKAGVSTSKAGVIVGVVVGVTIL 617
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.332 0.140 0.475
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,845
Number of Sequences: 37544
Number of extensions: 62363
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 12
length of query: 72
length of database: 14,793,348
effective HSP length: 52
effective length of query: 20
effective length of database: 12,841,060
effective search space: 256821200
effective search space used: 256821200
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 51 (24.6 bits)
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