GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002275-TA|BGIBMGA002275-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (143 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    26   2.6  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   2.6  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   5.9  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    24   7.8  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    24   7.8  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 98  DEEALATQRPPKYPTCALVLTPTYAVV 124
           +++ L  Q+PP+YP   +V+ P  + V
Sbjct: 347 NDDLLTLQQPPRYPHSQMVMLPARSPV 373


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 78  IWLLAALVSFLPISLGLHRPD 98
           +W+LA  VSFLPI    H  D
Sbjct: 326 LWMLAVYVSFLPIMTRRHIGD 346


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 58 DPLRYGRWVTRRVAITTIAMIWLLAALV 85
          +P R   W+TR V I  I + W   +L+
Sbjct: 39 EPDRPQHWITRVVIIVLIVLAWYFFSLL 66


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 10  FAGVNDLLGYWVF---GEQFCDTWVACDVMCSTASILNLCAISLDRYIHIKDPL 60
           + G+  +LG  +F     ++ D WV  +V  S A    +   +L R +HI   L
Sbjct: 443 YVGMIVILGIDLFIPPPSRYPDLWVILNVTLSFAGFFTIYLWTLGRLLHISSKL 496


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 5   AAVMTFAGVNDLLGYWVFGEQFCDTWVACDVMCSTA-SILN-LCA 47
           AA++     ND L +W         +  C  +C TA  +LN +CA
Sbjct: 914 AALINSESANDNLNHWAISLLIFQLYDPCLEVCKTAVKVLNEVCA 958


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.331    0.140    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,058
Number of Sequences: 5004
Number of extensions: 22936
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 5
length of query: 143
length of database: 2,362,478
effective HSP length: 67
effective length of query: 76
effective length of database: 2,027,210
effective search space: 154067960
effective search space used: 154067960
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 50 (24.2 bits)