Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002275-TA|BGIBMGA002275-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(143 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0773 + 27612237-27612330,27612426-27612523,27612605-276127... 30 0.83
01_06_1541 - 38127014-38128022,38128116-38128209,38128302-381285... 30 0.83
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931 29 1.1
05_01_0123 - 846081-846167,846264-846404,846749-846866,847382-84... 29 1.9
03_04_0083 - 17146422-17148068 29 1.9
06_03_0594 - 22600269-22600390,22600771-22600887,22600996-22601101 28 3.4
03_01_0172 + 1403822-1404109 28 3.4
10_08_0475 + 18182412-18183270,18183384-18183880 27 4.4
08_01_0293 - 2367453-2368088 27 7.7
02_03_0303 - 17506392-17506399,17507055-17507286,17507390-175074... 27 7.7
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 27 7.7
>03_05_0773 +
27612237-27612330,27612426-27612523,27612605-27612781,
27612869-27612969,27613079-27613154,27613255-27613314,
27613412-27613596,27613669-27613807,27614229-27614315,
27614939-27615127,27615243-27615461
Length = 474
Score = 29.9 bits (64), Expect = 0.83
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 59 PLRYGRWVTRRVAITTIAMIWLLAALVSFLPISLGLHRPDEEALATQRPPKYPTCALVLT 118
PL G V + + + TI LA + + L + LG P + YP A++L+
Sbjct: 58 PLMGGGHVEKAIVVQTILF---LAGINTLLQVHLGTRLP--AVMGASYAYIYPAVAIILS 112
Query: 119 PTYAVV 124
P +A+V
Sbjct: 113 PRFAIV 118
>01_06_1541 -
38127014-38128022,38128116-38128209,38128302-38128535,
38128643-38128744,38130893-38130956
Length = 500
Score = 29.9 bits (64), Expect = 0.83
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 84 LVSFLPISLGLHRPDEEALATQRPPKYPTCALVLTPTYAVVSSCISFILP 133
L S P S HR L R ++ C LVL + V++ +S +LP
Sbjct: 373 LASRWPESAFFHREYAVPLGGGRAVRFTLCKLVLRTAFVAVTTVVSLVLP 422
>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
Length = 246
Score = 29.5 bits (63), Expect = 1.1
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 3 VAAAVMTFAGVNDLLGYWVFGEQFCDTWVACDVMC-STASILNLCA-ISLDRYI---HIK 57
VA AV FA + G W + + DT ++ + A L L A +++ R H+
Sbjct: 17 VATAVFVFAAEGSVYGLW---KMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVN 73
Query: 58 DPLRYGRWVTRRVAITTIAMIWLLAALVSFLPISL 92
+ +G V RR++ A+ W L + L + L
Sbjct: 74 PAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLL 108
>05_01_0123 -
846081-846167,846264-846404,846749-846866,847382-847528,
848439-848441,848590-848627,848808-848851,848959-849016
Length = 211
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 97 PDEEALATQRPPKYPTCALVLTPTYAVVSSCI 128
PD + + KYPT +LV P YA V S I
Sbjct: 70 PDSDVITQVIEEKYPTPSLVTPPEYASVGSKI 101
>03_04_0083 - 17146422-17148068
Length = 548
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 30 WVACDVMCSTASILNLCAISLDRYIHIKDPLRYGRWVTRRVAITTIAMIWLLAALV 85
WV D ASI ++ I+++ ++ I D R + R I + W++A +V
Sbjct: 316 WVTKDPSDMHASIRSILCIAINGFMDIFDLARVQEMIFRGTDTVAILLEWIMARMV 371
>06_03_0594 - 22600269-22600390,22600771-22600887,22600996-22601101
Length = 114
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 80 LLAALVSFLPISLGLHRPDEEALATQRPPKYPTCALVLTP 119
+++++V+ P+S G A PP P C L LTP
Sbjct: 4 VISSVVAATPVSAGGDAAAASAPPAVEPPAAPACQLKLTP 43
>03_01_0172 + 1403822-1404109
Length = 95
Score = 27.9 bits (59), Expect = 3.4
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 68 RRVAITTIAMIWLLAALVSFLPISLGLHRPDEEALATQRPPKYPTCA 114
RR A+ + + + L + LP+SL L P E LA YPT A
Sbjct: 24 RRGALHFLRLFPRVFDLRALLPLSLSLTAPTAELLAVATFAAYPTAA 70
>10_08_0475 + 18182412-18183270,18183384-18183880
Length = 451
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 59 PLRYGRWVTRRVAITTIAMIWLLAALVSFLPISLGLH 95
P R+ + + R+A ++ +I L+AALV F + + LH
Sbjct: 238 PARWRKPIRFRIARWSVVVIALIAALVPFAAVLIFLH 274
>08_01_0293 - 2367453-2368088
Length = 211
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 32 ACDVMCSTASILNLCAISL 50
ACD +C TA +L LC +L
Sbjct: 44 ACDAVCGTAHMLKLCLRTL 62
>02_03_0303 -
17506392-17506399,17507055-17507286,17507390-17507461,
17507561-17508586,17509194-17509448,17510483-17510962
Length = 690
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 79 WLLAALVSFLPISLGLHRPDEEALATQRPPKYPTCALVLTPTYAVVS 125
W L + +SL +HRP+ E +A Q+ K P C L T A+ S
Sbjct: 355 WALEEERLSIVLSLSIHRPNRERIAAQK--KLP-CFLKQTVEVAIES 398
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 26.6 bits (56), Expect = 7.7
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 55 HIKDPLRYGRWVTRRVAITTIAMIWLLAALVSFLPISLGLHRPDEEALATQRPPKYPTCA 114
H++D R+ + TRRV + + AA VS P+S+ E AT +C
Sbjct: 59 HLEDDNRWEKGSTRRVPAASERRVERCAAAVSSGPLSMRSSSSRTEKDATSH-----SCC 113
Query: 115 LVLTPTYAVVSSCI 128
+L P+ + S +
Sbjct: 114 KILCPSQLPMDSAV 127
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.331 0.140 0.467
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,360,722
Number of Sequences: 37544
Number of extensions: 160639
Number of successful extensions: 444
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 11
length of query: 143
length of database: 14,793,348
effective HSP length: 75
effective length of query: 68
effective length of database: 11,977,548
effective search space: 814473264
effective search space used: 814473264
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 56 (26.6 bits)
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