GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002274-TA|BGIBMGA002274-PA|undefined
         (63 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0LXU1 Cluster: FtsX family membrane protein; n=10; Bac...    32   2.6  
UniRef50_Q65730 Cluster: Genome polyprotein [Contains: P1 protei...    31   5.9  

>UniRef50_A0LXU1 Cluster: FtsX family membrane protein; n=10;
           Bacteroidetes|Rep: FtsX family membrane protein -
           Gramella forsetii (strain KT0803)
          Length = 421

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 11  NRVERSIHVSNLAIQAGIHIVMFMNHGDLTSGDAKAHSRLEQKRKVADIG 60
           N V R ++     +      ++     D+TSG    HS L+QKRKVA IG
Sbjct: 114 NNVVRGLNTGAFNVYGDYPEIIQQEPMDITSGRFLNHSDLQQKRKVAVIG 163


>UniRef50_Q65730 Cluster: Genome polyprotein [Contains: P1
           proteinase (N-terminal protein); Helper component
           proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa
           protein 1 (6K1); Cytoplasmic inclusion protein (EC
           3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral
           genome-linked protein (VPg); Nuclear inclusion protein A
           (EC 3.4.22.44) (NI-a) (NIa) (NIa-pro) (49 kDa
           proteinase) (49 kDa-Pro); Nuclear inclusion protein B
           (EC 2.7.7.48) (NI-b) (NIb) (RNA-directed RNA
           polymerase); Coat protein (CP)]; n=13; Brome streak
           mosaic virus|Rep: Genome polyprotein [Contains: P1
           proteinase (N-terminal protein); Helper component
           proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa
           protein 1 (6K1); Cytoplasmic inclusion protein (EC
           3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral
           genome-linked protein (VPg); Nuclear inclusion protein A
           (EC 3.4.22.44) (NI-a) (NIa) (NIa-pro) (49 kDa
           proteinase) (49 kDa-Pro); Nuclear inclusion protein B
           (EC 2.7.7.48) (NI-b) (NIb) (RNA-directed RNA
           polymerase); Coat protein (CP)] - Brome streak virus
           (strain 11-Cal) (BStV) (Brome streak mosaicrymovirus)
          Length = 3093

 Score = 30.7 bits (66), Expect = 5.9
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 11  NRVERSIHVSNL--AIQAGIHIVMFMNHGDLTSGDAKAHSRLEQ 52
           + V+R+IHV +    +Q+G+H++   N GDL   D    S L++
Sbjct: 762 DHVQRTIHVPSPFGIVQSGMHMIQINNLGDLIKLDTMGASELKE 805


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.322    0.132    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,585,532
Number of Sequences: 1657284
Number of extensions: 1502607
Number of successful extensions: 2980
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2979
Number of HSP's gapped (non-prelim): 2
length of query: 63
length of database: 575,637,011
effective HSP length: 43
effective length of query: 20
effective length of database: 504,373,799
effective search space: 10087475980
effective search space used: 10087475980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)