GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002274-TA|BGIBMGA002274-PA|undefined
         (63 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0528 - 4148737-4149483,4149618-4150147,4150238-4150736,415...    26   3.3  
05_01_0183 - 1289608-1289643,1289965-1290026,1290113-1290162,129...    26   4.4  
07_01_0764 + 5860571-5860780,5860865-5860996,5861082-5861252,586...    25   5.8  
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           25   5.8  

>11_01_0528 -
           4148737-4149483,4149618-4150147,4150238-4150736,
           4152041-4152043
          Length = 592

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 6   LQLSYNRVERSIHVSNLAIQAGIHIVMFMNHGDLTSGDAKAHSRLEQKRKV 56
           + L+ +RVE  +   N A    +H+     HG        AH++  +  KV
Sbjct: 71  VHLAQDRVENIMGCQNTAGDTALHLAARHGHGATVEALVAAHAKATELNKV 121


>05_01_0183 -
           1289608-1289643,1289965-1290026,1290113-1290162,
           1290260-1290357,1290547-1290927,1291191-1291697,
           1291922-1291996,1292095-1292286,1292599-1292658
          Length = 486

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/18 (66%), Positives = 16/18 (88%), Gaps = 1/18 (5%)

Query: 39  LTSG-DAKAHSRLEQKRK 55
           LTSG ++KAH +LE+KRK
Sbjct: 360 LTSGKNSKAHKQLEEKRK 377


>07_01_0764 +
          5860571-5860780,5860865-5860996,5861082-5861252,
          5861345-5861365,5861457-5861972,5862008-5862301
          Length = 447

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 28 IHIVMFMNHGDLTSGD--AKAHSRLEQKRKVADI 59
          +H  + MN   LT+GD   +  S LE K+ V D+
Sbjct: 22 VHAKVNMNASSLTNGDDSLRGKSSLESKKAVFDV 55


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 6   LQLSYNRVERSIHVSNLAIQAGIHIVMFMNHG 37
           L LS+NR++  I +  +++  G+ ++ + N+G
Sbjct: 641 LNLSFNRLQGEIPIPAISLPYGVVVLDYSNNG 672


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.132    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,476
Number of Sequences: 37544
Number of extensions: 40437
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 4
length of query: 63
length of database: 14,793,348
effective HSP length: 43
effective length of query: 20
effective length of database: 13,178,956
effective search space: 263579120
effective search space used: 263579120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)