GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002274-TA|BGIBMGA002274-PA|undefined
         (63 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43486| Best HMM Match : RdRP (HMM E-Value=2.4e-27)                  26   3.8  
SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40)            26   5.0  
SB_14720| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.0  
SB_14190| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  
SB_14192| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  

>SB_43486| Best HMM Match : RdRP (HMM E-Value=2.4e-27)
          Length = 664

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)

Query: 9  SYNRVERSIHVSNLAIQAGIHIV 31
          +Y  VE+S+ + +L++ AGIH++
Sbjct: 39 AYRYVEKSLLLQHLSLSAGIHVL 61


>SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40)
          Length = 598

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 7  QLSYNRVERSIHVSNLAIQAGIHIVMFMNHG 37
          +L  N V +  H S LAI  G ++ +F +HG
Sbjct: 64 KLYVNGVLKITHASALAINDGRYLFLFRSHG 94


>SB_14720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 36 HGDLTSGDAKAHSRLEQKRKVAD 58
          H D T  DA+AH+++  K+ + D
Sbjct: 26 HADKTEQDARAHAQMRSKKLLRD 48


>SB_14190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 17 IHVSNLAIQAGIHIVMFMNHGDLTSG 42
          +HVS +A + G+     +N+G LTSG
Sbjct: 73 LHVSTIAKEKGLVAWRALNNGALTSG 98


>SB_14192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 17 IHVSNLAIQAGIHIVMFMNHGDLTSG 42
          +HVS +A + G+     +N+G LTSG
Sbjct: 73 LHVSTIAKEEGLVAWRALNNGALTSG 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.132    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,704,058
Number of Sequences: 59808
Number of extensions: 42686
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 16,821,457
effective HSP length: 42
effective length of query: 21
effective length of database: 14,309,521
effective search space: 300499941
effective search space used: 300499941
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)