Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002273-TA|BGIBMGA002273-PA|undefined
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 30 1.2
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 29 2.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 28 5.0
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 28 5.0
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 28 5.0
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 8.7
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 8.7
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 27 8.7
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 364 NLFVRNNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLCSFGANGNPY 423
NL + + P ALF N+ + ++ VPFS +L F + T+ P
Sbjct: 399 NLLLTPFVVPGFMLAAALFFNMVFWSKSSSSTVPFSSWLLLIFLYLLFTV--------PL 450
Query: 424 PDVLALISFAINVLAKYPYEKDTVVHQGWRFLDFHISNYPSYVLGNSIEFCLNGRMFFSL 483
V +LI F P + + Q +S++PS ++G SI F + FS+
Sbjct: 451 SFVGSLIGFRSREFVP-PVRTNQIPRQIPSH-SIWLSSFPSAIIGGSIPFLVILIELFSI 508
Query: 484 L 484
L
Sbjct: 509 L 509
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 362 SENLFVRNNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFL 411
+ N+ + NLG ++FF+ + LF+ +++++ F+ LC+ SF F+
Sbjct: 41 ARNILPKGNLGFLVEFFIFCLIPLFVI-YVSSKVGVFT-LCIASFLPSFV 88
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 28 LRNQLAEDGCAESQVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAH 78
L N LA+ C E+ +L+ + +EK E+E + ++ E ++ E+ +
Sbjct: 1062 LENSLADFSCEETIALLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVN 1112
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 699 YVKDVSLLNVKNKWRDFAYWLPGFLQEYFKCYYGEEY 735
Y K++S + K D A+W L E KC++ E Y
Sbjct: 1226 YKKNISEFE-REKVEDVAHWAQSSLSEMAKCFHAELY 1261
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 642 KNLLKNEFLSEYEDNNYHINWDDYYTHCNNPSW---TDYNIAATQIKCSVLEGAN 693
+N+ + S +N + N +D T N +W T YN++ T C+ +GAN
Sbjct: 20 RNIFGATYTSLLLNNTINGNINDQSTAYYNLTWEGNTAYNVSLTLSTCTAFDGAN 74
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 389 PFIATQWVPF-SELCVLSFFLMFLTL-CS 415
PF Q PF S LC LSFF + L L CS
Sbjct: 26 PFFFLQMTPFYSILCFLSFFALLLHLPCS 54
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 506 LPHCVTLSWLQMFIMSSHGCTTYGLIRGTLALVCSFLFLPLIGVMTVTLPLFAFLQ 561
LP + L F + C Y L L+LV LF L ++TLPL FL+
Sbjct: 51 LPCSIYSHTLHFFHHFTIACYHYSLC---LSLVALLLFYTLYPFQSITLPLMPFLE 103
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 27.5 bits (58), Expect = 8.7
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 596 RFVTPFQLVFGTLAIIY--FGNQFVLNIRDDGLPSGLIELLADEKPSIKNLLKNEFLSEY 653
RF++ +G L + Y G+ IR+ L +GL+ + + ++ L+K +F++E
Sbjct: 113 RFLSERAKQYGRLGVDYAQVGDAPKKKIREMKLENGLLRNVEGIQAQLRRLIKCQFVAEE 172
Query: 654 EDNNYHI 660
DN+ I
Sbjct: 173 IDNDIAI 179
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 109 AASRQETVARKA--ARDLFASLSNGEQYITTVQLERRIRE 146
AA+ Q+ + + A +D A L GEQY VQL++ + E
Sbjct: 417 AANLQKELPKDANKLKDFKAKLGEGEQYPELVQLQKEVAE 456
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,000,486
Number of Sequences: 5004
Number of extensions: 170716
Number of successful extensions: 537
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 12
length of query: 894
length of database: 2,362,478
effective HSP length: 79
effective length of query: 815
effective length of database: 1,967,162
effective search space: 1603237030
effective search space used: 1603237030
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)
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