GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002273-TA|BGIBMGA002273-PA|undefined
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1026 - 8124929-8125120,8125294-8125344,8125610-8125743,812...    34   0.58 
03_06_0776 - 36176390-36177589                                         30   7.1  
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857...    30   7.1  
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771...    30   9.4  

>01_01_1026 -
           8124929-8125120,8125294-8125344,8125610-8125743,
           8125842-8126096,8126175-8126513,8126607-8126748,
           8127068-8127199
          Length = 414

 Score = 33.9 bits (74), Expect = 0.58
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 483 LLIPVILVLMARRSDWQG---FFKQTLPHCVTLSWLQMFIMSSHGCTTYGLIRGTLALVC 539
           + +P I ++     DW     FF   LP+C+ +    + +  SH C  +  +      +C
Sbjct: 1   MTLPAIHMIQPVPIDWGQCTFFFHAILPNCLLIETPVLLLQHSHDCKMHTTMVALYITIC 60

Query: 540 SFLFLPLIGVMTVTLPLFAFLQYITLPRIIYTATMVLSFGLSLGFTCLLAKSEATKRFVT 599
           S LF+       V+  L +FL Y    R        L+ G  + F     +S + K F+T
Sbjct: 61  SILFI-------VSKMLISFLLYKKWARKKRIIENSLTGGKMVMFRSAAMQSLSPKSFLT 113


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 371 LGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTLCSFGANGNPYPDVLALI 430
           + P +  F+ L + L L+P +A   +  + + +L+ FL+ L L     N N  PD L   
Sbjct: 1   MAPRLLCFLFLLLQLLLFPRVAAIVLAATPVLLLAAFLLALVLVYSEPNNNNEPDHL--- 57

Query: 431 SFAINVLAKYPYEKD 445
              I + ++ P+  D
Sbjct: 58  -IPIRIRSRNPHAHD 71


>01_06_0072 +
           26184592-26184828,26184934-26185107,26185591-26185759,
           26185863-26185924,26186506-26186630,26186735-26186852,
           26187760-26187897
          Length = 340

 Score = 30.3 bits (65), Expect = 7.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 730 YYGEEYSNVC-RGSDGVQSVAECEFVSSVARQ 760
           Y G  ++N C +G +GV  V EC FV S   +
Sbjct: 257 YAGAVFANACLKGLNGVPDVVECSFVQSTVTE 288


>06_01_0993 +
           7710016-7710977,7711081-7711316,7711422-7711501,
           7711977-7712072,7712995-7713892,7713983-7714093,
           7714657-7714751
          Length = 825

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 821 LSNENRPY-NIGAKDLTIRGYEINCLECKEARGSV-TLKTSSASKFSELFKTIVNDCVVS 878
           LS ENR + ++G  D+  +G +   L C+   G++ T+K  S  +F  ++ + V++C   
Sbjct: 312 LSPENRAFTSVGLCDVDEKGVQYMLL-CRAILGNMGTIKPGSQDEFLSIYDSGVDNCSNP 370

Query: 879 TKYIL 883
           + Y++
Sbjct: 371 SYYVI 375


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,981,703
Number of Sequences: 37544
Number of extensions: 959195
Number of successful extensions: 2750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2748
Number of HSP's gapped (non-prelim): 4
length of query: 894
length of database: 14,793,348
effective HSP length: 89
effective length of query: 805
effective length of database: 11,451,932
effective search space: 9218805260
effective search space used: 9218805260
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 64 (29.9 bits)