GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002273-TA|BGIBMGA002273-PA|undefined
         (894 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein p...    27   1.6  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   6.7  

>AB090820-1|BAC57915.1|  527|Anopheles gambiae gag-like protein
           protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 56  EADKISNFKQALEWLICATEQAHPEARRLLR--RCIRSGVIDEDSAAIVRAKSCLAASRQ 113
           EA+ + + +  L +  C+  +A   + +L R  RC+  G I        R+K CL    Q
Sbjct: 435 EAELVKDRRLELGYTYCSVHEAPKVSGQLTRCFRCLERGHIAATCTGEDRSKRCLRCGDQ 494

Query: 114 ETVARKAARDLFASLSNGEQYI 135
              A     ++   L  G   I
Sbjct: 495 THKASGCTNEVKCMLCGGAHRI 516


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 837 IRGYEINCLECKEARGSVTLKTSSASKFSELFKTIVNDCVVSTKYILNFMLN 888
           +R  E    ECK+A  S + K  +  K  + +   +N+   S   +L   +N
Sbjct: 852 VRALEAKVAECKQAFDSSSTKADAMQKNVDRYTEQINEITNSKVKVLQTKIN 903


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.325    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 893,948
Number of Sequences: 2123
Number of extensions: 36295
Number of successful extensions: 139
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 2
length of query: 894
length of database: 516,269
effective HSP length: 70
effective length of query: 824
effective length of database: 367,659
effective search space: 302951016
effective search space used: 302951016
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)