Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002273-TA|BGIBMGA002273-PA|undefined
(894 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132949-1|CAB61068.2| 463|Caenorhabditis elegans Hypothetical ... 33 0.90
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil... 33 1.2
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil... 33 1.2
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p... 32 2.1
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr... 32 2.1
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos... 32 2.1
AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched relat... 31 2.7
Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical pr... 31 3.6
Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical pr... 31 3.6
AC006769-15|AAF60587.1| 337|Caenorhabditis elegans Serpentine r... 30 6.3
>AL132949-1|CAB61068.2| 463|Caenorhabditis elegans Hypothetical
protein Y53F4B.1 protein.
Length = 463
Score = 33.1 bits (72), Expect = 0.90
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 34 EDGCAESQVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLRR 87
ED CA Q K +K ++ K ++ + +EW + T+++ P ++LL +
Sbjct: 249 EDDCAVGQRAFLKMYNNKKYDMSGCKSNSICETIEWCLNNTQESRPTFKQLLSK 302
>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
protein 3, isoform b protein.
Length = 1361
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 636 DEKPSIKNLLKNEFLSEYEDNNYHINWDDYYTHCNNPSWTDYNIAATQIK 685
DE I+ L+N + ++ ++ W + H P+W D +++ QIK
Sbjct: 12 DEPGPIRRFLENRLIGNFDSEDFSDAWKKKFAHA--PTWCDADMSLQQIK 59
>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
protein 3, isoform a protein.
Length = 1358
Score = 32.7 bits (71), Expect = 1.2
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 636 DEKPSIKNLLKNEFLSEYEDNNYHINWDDYYTHCNNPSWTDYNIAATQIK 685
DE I+ L+N + ++ ++ W + H P+W D +++ QIK
Sbjct: 12 DEPGPIRRFLENRLIGNFDSEDFSDAWKKKFAHA--PTWCDADMSLQQIK 59
>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
protein F20G4.3 protein.
Length = 2003
Score = 31.9 bits (69), Expect = 2.1
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 41 QVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLRRCIRSGVIDEDSAA 100
+V +KQL++ K LEA ++ LE E+ RR + + +E +
Sbjct: 1028 EVERSKQLVKAKARLEAT-VAEINDELE-----KEKQQRHNAETARRAAETQLREEQESC 1081
Query: 101 IVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 147
+ + + + Q + RK + S+ N E+ QLER IREI
Sbjct: 1082 LEKTRKAEELTNQ--LMRKESELSQISIRNDEELAARQQLEREIREI 1126
>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical protein
F20G4.3 protein.
Length = 2003
Score = 31.9 bits (69), Expect = 2.1
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 41 QVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLRRCIRSGVIDEDSAA 100
+V +KQL++ K LEA ++ LE E+ RR + + +E +
Sbjct: 1028 EVERSKQLVKAKARLEAT-VAEINDELE-----KEKQQRHNAETARRAAETQLREEQESC 1081
Query: 101 IVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 147
+ + + + Q + RK + S+ N E+ QLER IREI
Sbjct: 1082 LEKTRKAEELTNQ--LMRKESELSQISIRNDEELAARQQLEREIREI 1126
>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
heavy chain II protein.
Length = 2003
Score = 31.9 bits (69), Expect = 2.1
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 41 QVVLAKQLLEEKCELEADKISNFKQALEWLICATEQAHPEARRLLRRCIRSGVIDEDSAA 100
+V +KQL++ K LEA ++ LE E+ RR + + +E +
Sbjct: 1028 EVERSKQLVKAKARLEAT-VAEINDELE-----KEKQQRHNAETARRAAETQLREEQESC 1081
Query: 101 IVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 147
+ + + + Q + RK + S+ N E+ QLER IREI
Sbjct: 1082 LEKTRKAEELTNQ--LMRKESELSQISIRNDEELAARQQLEREIREI 1126
>AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched related
family protein12, isoform a protein.
Length = 901
Score = 31.5 bits (68), Expect = 2.7
Identities = 12/53 (22%), Positives = 27/53 (50%)
Query: 361 ESENLFVRNNLGPFIQFFVALFVNLFLYPFIATQWVPFSELCVLSFFLMFLTL 413
ES ++ V+ + F++ +++L N F F+ W+ F + + +M + L
Sbjct: 485 ESFDVIVKRRVTSFLENYISLITNAFFQIFVVLVWIAFLVVSIYGITIMNINL 537
>Z74028-6|CAI91174.1| 674|Caenorhabditis elegans Hypothetical
protein C14C10.3b protein.
Length = 674
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 100 AIVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 147
A + K+CL A RQ D F L N + +VQ +++IRE+
Sbjct: 11 ATILNKTCLTAVRQSLKHTDGRFDYFRYLGNDASHAISVQKDQQIREV 58
>Z74028-5|CAA98427.1| 677|Caenorhabditis elegans Hypothetical
protein C14C10.3a protein.
Length = 677
Score = 31.1 bits (67), Expect = 3.6
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 100 AIVRAKSCLAASRQETVARKAARDLFASLSNGEQYITTVQLERRIREI 147
A + K+CL A RQ D F L N + +VQ +++IRE+
Sbjct: 11 ATILNKTCLTAVRQSLKHTDGRFDYFRYLGNDASHAISVQKDQQIREV 58
>AC006769-15|AAF60587.1| 337|Caenorhabditis elegans Serpentine
receptor, class j protein19 protein.
Length = 337
Score = 30.3 bits (65), Expect = 6.3
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 371 LGPFIQFFVALFVN-LFLYPFIATQWVPFSELCVLSFFLMFLTLCSFGAN 419
L P I FF++L N +F+Y +++ V F LS+F LC+ A+
Sbjct: 9 LVPKISFFLSLVFNPVFVYLIHSSKHVLFGNYRYLSYFFAIFNLCASAAD 58
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.325 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,375,168
Number of Sequences: 27539
Number of extensions: 905374
Number of successful extensions: 2952
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2943
Number of HSP's gapped (non-prelim): 15
length of query: 894
length of database: 12,573,161
effective HSP length: 88
effective length of query: 806
effective length of database: 10,149,729
effective search space: 8180681574
effective search space used: 8180681574
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 64 (29.9 bits)
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