GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002273-TA|BGIBMGA002273-PA|undefined
         (894 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    25   3.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   4.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 711 KWRDFAYWLPGFLQEYFKCYYGEEYSNVC--RGSDGVQSVAECEFVSSVAR 759
           KWR F Y L G   E F+     E +  C  RG    + +    ++  VAR
Sbjct: 425 KWRQFLYCLAG--DESFRKRRQREAAGNCRKRGEKIARHINSVSYIDKVAR 473


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 461 NYPSYVLGNSIEF-CLNGRMFFSL 483
           NYP ++L NS+ F  + G  +F L
Sbjct: 238 NYPPFMLSNSLNFPQIRGEFYFFL 261


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,762
Number of Sequences: 429
Number of extensions: 10314
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 894
length of database: 140,377
effective HSP length: 64
effective length of query: 830
effective length of database: 112,921
effective search space: 93724430
effective search space used: 93724430
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 48 (23.4 bits)