GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002271-TA|BGIBMGA002271-PA|IPR001128|Cytochrome P450
         (223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    77   3e-15
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    68   1e-12
SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transf...    25   8.9  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   8.9  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 76.6 bits (180), Expect = 3e-15
 Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 4/212 (1%)

Query: 15  TDEEIRDEVDTLILAGSDTSSQLTLVVVMVLGSYPEIQDKVYQEVASVC-GVSDTDVEKH 73
           +DEEI     + + A  D +S     +  +L  +P++  KV +E   +  G  D  +   
Sbjct: 305 SDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLD 364

Query: 74  QHPRLVYTEAVLKETLRLYPTVAVVLRKPENEIKLK-NYTIPANSNCVLGIYGLNRHPVW 132
              ++ YT AV+KE LRL P V +V  + +    +  +YT+P ++  +  +YG       
Sbjct: 365 LMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKV 424

Query: 133 GPDAHTFRPERWLEPGGVPGNPNAFAGFSVGKRNCIGKTYAL--ISTKIILAHLVRRYKV 190
            P+  TF P+RW   G    +P  +  F  G   C+G+ YA+  +   I  A ++  +K 
Sbjct: 425 YPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAVNHLIACIGKASIMLDWKH 484

Query: 191 TADISKIEFKMDVIMTPSDNCYVEFELRNGTT 222
                     +     P D CY++F   + +T
Sbjct: 485 KRTPDSDTQMIFATTFPQDMCYLKFSPFDAST 516


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 20/203 (9%)

Query: 7   KDSDGDALTDEEIRDEVDTLILAGSDTSSQLTLVVVMVLGSYPEIQDKVYQEVASVCGVS 66
           K  DG  L + EI   +  L++AG  TS+   + V+ +LGS PEI + +++E   V G  
Sbjct: 266 KYRDGRPLKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVG-E 324

Query: 67  DTDVEKHQHPRLVYTEAVLKETLRLYPTVAVVLRKPENEIKL--KNYTIPANSNCVLGIY 124
           + +++  Q+  +     V++ETLRL+P +   +RK + ++ +      IPAN N +L   
Sbjct: 325 NLELKFDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPAN-NYLLAAP 383

Query: 125 GLN-RHPVWGPDAHTFRPERW------------LEPG-GV--PGNPNAFAGFSVGKRNCI 168
           GL      +   A  F P+RW            ++ G G+   G  + +  F  G+  CI
Sbjct: 384 GLTATEEEYFTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCI 443

Query: 169 GKTYALISTKIILAHLVRRYKVT 191
           G+ +A +    I++  V  Y  T
Sbjct: 444 GEQFAYMHLSTIISKFVHDYTWT 466


>SPAPB8E5.04c |||phosphatidylglycerol/phosphatidylinositol transfer
           protein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 18  EIRDEVDTLILAGSDTSSQLTLVVVMVLGSYPEIQDKVYQEVASVCGVSDTDVEK 72
           E    V T +L GS    Q+    V ++    +I DK Y+  A  C V    + K
Sbjct: 84  ETEINVGTTVLNGSYVDIQVKYGFVRIVNERLDICDKAYELAAVECPVEPGIITK 138


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 124 YGLNRHPVWGPDAHTFRPERWLEPGGVPGNPNAFAGFSVGKRNCIG--KTYALISTKIIL 181
           Y L++   W   A  +  + W++  GVPG+ N F   + GK   IG  +   +  T  I+
Sbjct: 135 YWLDQALTW---AEQYGLKVWIDLHGVPGSQNGFE--NSGKTGSIGWQQNDTVTRTLDII 189

Query: 182 AHLVRRY 188
            ++  +Y
Sbjct: 190 TYVANKY 196


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,054,716
Number of Sequences: 5004
Number of extensions: 44108
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 4
length of query: 223
length of database: 2,362,478
effective HSP length: 70
effective length of query: 153
effective length of database: 2,012,198
effective search space: 307866294
effective search space used: 307866294
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)