GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002270-TA|BGIBMGA002270-PA|IPR001128|Cytochrome P450
         (246 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    60   4e-10
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    38   0.001
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.3  
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.3  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   4.4  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   4.4  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 3/142 (2%)

Query: 104 RLVYTEAVLKETLRLYPTIPLVLRKPENEIKLK-NYTIPANSNCVLGIYGLNRHPVWGPD 162
           ++ YT AV+KE LRL P + +V  + +    +  +YT+P ++  +  +YG        P+
Sbjct: 368 KMTYTRAVVKECLRLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKVYPE 427

Query: 163 AHTFRPERWLEPGGVPGNPNAFAGFSVGKRNCIGKTYAL--ISTKIILAHLVRRYKVTAD 220
             TF P+RW   G    +P  +  F  G   C+G+ YA+  +   I  A ++  +K    
Sbjct: 428 PETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAVNHLIACIGKASIMLDWKHKRT 487

Query: 221 ISKIEFKMDVIMTPSDNCYVDF 242
                  +     P D CY+ F
Sbjct: 488 PDSDTQMIFATTFPQDMCYLKF 509


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 19/126 (15%)

Query: 111 VLKETLRLYPTIPLVLRKPENEIKL--KNYTIPANSNCVLGIYGLN-RHPVWGPDAHTFR 167
           V++ETLRL+P I   +RK + ++ +      IPAN N +L   GL      +   A  F 
Sbjct: 342 VIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPAN-NYLLAAPGLTATEEEYFTHATDFD 400

Query: 168 PERW------------LEPG-GV--PGNPNAFAGFSVGKRNCIGKTYALISTKIILAHLV 212
           P+RW            ++ G G+   G  + +  F  G+  CIG+ +A +    I++  V
Sbjct: 401 PKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMHLSTIISKFV 460

Query: 213 RRYKVT 218
             Y  T
Sbjct: 461 HDYTWT 466


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 96  DVEKHHHPRLVYTEAVL-KETLRLYPTIPLVLR-KPENEIKLKNYTIPANSNCVLGIYGL 153
           +VE+ +   + + +A + +  L ++ T+P++   K   + +L+   I   S+C+  IY L
Sbjct: 447 EVEQLYQENVEWDDAAIDRYYLLIHSTLPILHHSKARLKSELEKAPINLRSSCLHAIYSL 506

Query: 154 NRHPVWGPDAHTF 166
              P +    H F
Sbjct: 507 VNRPPFATLGHVF 519


>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 88  SVCGVSDDDVEKHHHPRL-VYTEAVLKETLRLYPTIP 123
           S+C +S DDV K   P    + E ++++ L++   IP
Sbjct: 10  SICPISSDDVLKATDPNFESWRERIVQDALKIVEQIP 46


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 79  DTSSQLTVASVCGVSDDDVEKHHHPRLVYTEAVLKETLRLYPTIPLVLRKPENEIKLK 136
           D SS + ++ +C   + DV      +L     + K  +  YP + L    PE EIK K
Sbjct: 896 DFSSYVQISLLCQDENFDVRNLFLTKLQKQLQLKKLPISYYPLLFLTAVDPEEEIKTK 953


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 7   TDPEDNLTVANGTLQKHFVYQFASNWLGDGLITSSERKFKSMLELLLKDSDGDALTDEEI 66
           T P D         QK+      ++ +   L TS + K  S  EL  K SDG+ L + ++
Sbjct: 466 TTPIDKDGQITSLQQKNGTSNQVADCMNKLLHTSLDGKKLSPSELCNKFSDGEGLPNRKV 525

Query: 67  RD---EVDTLILAGSDTSSQLTVASVCGVSDDDVEKH-HHPRLVYTEAVLKETLR 117
                E D   ++ S   S  T +++       V  H   P+ +Y E + K  +R
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLYVEKLEKLNIR 580


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,186,703
Number of Sequences: 5004
Number of extensions: 51217
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 7
length of query: 246
length of database: 2,362,478
effective HSP length: 71
effective length of query: 175
effective length of database: 2,007,194
effective search space: 351258950
effective search space used: 351258950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)