GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002269-TA|BGIBMGA002269-PA|IPR002401|E-class P450, group
I, IPR001128|Cytochrome P450
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    73   9e-14
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    60   4e-10
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    30   0.62 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   3.3  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.3  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   5.7  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 72.5 bits (170), Expect = 9e-14
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 2/157 (1%)

Query: 210 FTDKEIRNEVDTFIAAGSHTSSQLMTVVVMVLGSYPEIQDKVYQE-IKSVCGDSDADVDK 268
           F+D+EI     +F+ A    +S  MT +  +L  +P++  KV +E ++   GD D  +  
Sbjct: 304 FSDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSL 363

Query: 269 LQHPRLVYTEAVLKETLRLYPIAPVVLRKTENEIKLK-NYTIPANSNCLLGIYGLNRHPV 327
               ++ YT AV+KE LRL P   +V  + +    +  +YT+P ++  +  +YG      
Sbjct: 364 DLMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSK 423

Query: 328 WGPDAHTFRPERWLEPGGVPDDPNAFAGFSVGKRNCI 364
             P+  TF P+RW   G     P  +  F  G   C+
Sbjct: 424 VYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCL 460


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 7/144 (4%)

Query: 212 DKEIRNEVDTFIAAGSHTSSQLMTVVVMVLGSYPEIQDKVYQEIKSVCGDSDADVDKLQH 271
           + EI   +   + AG HTS+  +  V+ +LGS PEI + +++E K V G+ + ++   Q+
Sbjct: 275 EHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGE-NLELKFDQY 333

Query: 272 PRLVYTEAVLKETLRLYPIAPVVLRKTENEIKL--KNYTIPANSNCLLGIYGLN-RHPVW 328
             +     V++ETLRL+P     +RK + ++ +      IPAN N LL   GL      +
Sbjct: 334 KDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPAN-NYLLAAPGLTATEEEY 392

Query: 329 GPDAHTFRPERWLEPGGVPDDPNA 352
              A  F P+RW +   V +D NA
Sbjct: 393 FTHATDFDPKRWND--RVNEDENA 414


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 246 EIQDKVYQEIKSVCGDSDADVDKLQHPRLVYTEAVLKETLRLYPIA 291
           E + + Y  + S+ GD    +D L  P  V+ + ++K +L+LY +A
Sbjct: 239 EAEFRAYMVLLSL-GDPSVGLDTLSWPDFVFKKPIVKTSLKLYSLA 283


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 135 LQNILLHNSFIYKLSALKKKEDELIETIMAMSNKAINSKRRALKNKQESHENGCASEKKT 194
           +QN+L  NS   KL A  +K ++   T   +S K  N + ++L+ K    +N C SEKKT
Sbjct: 375 VQNLL--NSLEGKLQAHLEKFEQ---TERDISEK--NEEVKSLREKAAKVKNDCTSEKKT 427

Query: 195 Q 195
           +
Sbjct: 428 R 428


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 17  NGELQKHYF-YQFTSNWVGDGLVTSAGETWKRHRKLLNPAFSQQMLNIYTAVFNRESRNL 75
           N E   H F + F S  + +  ++S    W +HR  +N  F+Q+ LN+            
Sbjct: 277 NSEEYPHLFIHLFMSENIPN--LSSIRANWPQHRLFINLHFNQKDLNLIEVWTPPNDYTY 334

Query: 76  ISAIEIQMKSGPVLITAAFKEMALKTLL 103
              +++Q  S P L +     +  K LL
Sbjct: 335 ALVVDLQPDSPPQLSSNLITWLKYKILL 362


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 149 SALKKKEDELIE--TIMAMSNKAINSKRRALKNKQESHENGCASEKKTQXXXXXXXXXXX 206
           + L    +EL E   ++   ++ +N+ R  +K +++  E+  +S +  Q           
Sbjct: 469 ACLNSSSNELKEKSALIDKKDQELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHE 528

Query: 207 XEAFTDKEIRNEVDTFIAAGSHTSSQLMTV 236
                  E++ E+ T I+   H SSQL T+
Sbjct: 529 VYESQLNELKGELQTEISNSEHLSSQLSTL 558


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 134 RLQNILLHNSFIYKLSALKKKEDELIETIMAMSNKAINSKRRALKNKQESHENGCASEK 192
           R++ +   N  I      K  E E++    ++SNK IN++  A +  +E + NG A E+
Sbjct: 214 RVEAVTSENKSIDSAPQEKNHEYEIVSP-KSLSNK-INNQAAAQRRTEEDNANGVAQEE 270


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,418
Number of Sequences: 5004
Number of extensions: 69048
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 7
length of query: 377
length of database: 2,362,478
effective HSP length: 74
effective length of query: 303
effective length of database: 1,992,182
effective search space: 603631146
effective search space used: 603631146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)