GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002266-TA|BGIBMGA002266-PA|IPR001993|Mitochondrial
substrate carrier
         (198 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    45   4e-07
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    45   4e-07

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 45.2 bits (102), Expect = 4e-07
 Identities = 28/146 (19%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 6   YRGVWECARHVYRAEGLRAFYRSYGTQIAMNVPFQALHFVTYEWCQSVLNPARKYDPRXX 65
           + G+  C   +++A+G+   YR +G  +   + ++A +F  Y+  + +L   +K      
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLIS 215

Query: 66  XXXXXXXXXXXXXXTTPLDVCKTVLNTQESAARADGL----LEAASQVMRATGPLGFFKG 121
                         + P D  +  +  Q   A+++ L    L   + + +  G   FFKG
Sbjct: 216 WGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275

Query: 122 VQARVLYQMPAAAICWLTYETFKHML 147
             + +L +    A+  + Y+  K++L
Sbjct: 276 AFSNIL-RGTGGALVLVLYDEIKNLL 300



 Score = 29.9 bits (64), Expect = 0.017
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 10/157 (6%)

Query: 6   YRGVWECARHVYRAEGLRAFYRSYGTQIAMNVPFQALHFVTYE-WCQSVLNPARKYDPRX 64
           Y+G+ +C   + + +G  +++R     +    P QAL+F   + + Q  L    K     
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112

Query: 65  XXXXXXXXXXXXXXXTT-----PLDVCKTVLNTQESAARAD----GLLEAASQVMRATGP 115
                          T+     PLD  +T L      A  +    GL    +++ +A G 
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI 172

Query: 116 LGFFKGVQARVLYQMPAAAICWLTYETFKHMLGNTKE 152
            G ++G    V   +   A  +  Y+T + ML + K+
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKK 209


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 45.2 bits (102), Expect = 4e-07
 Identities = 28/146 (19%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 6   YRGVWECARHVYRAEGLRAFYRSYGTQIAMNVPFQALHFVTYEWCQSVLNPARKYDPRXX 65
           + G+  C   +++A+G+   YR +G  +   + ++A +F  Y+  + +L   +K      
Sbjct: 156 FTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLIS 215

Query: 66  XXXXXXXXXXXXXXTTPLDVCKTVLNTQESAARADGL----LEAASQVMRATGPLGFFKG 121
                         + P D  +  +  Q   A+++ L    L   + + +  G   FFKG
Sbjct: 216 WGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275

Query: 122 VQARVLYQMPAAAICWLTYETFKHML 147
             + +L +    A+  + Y+  K++L
Sbjct: 276 AFSNIL-RGTGGALVLVLYDEIKNLL 300



 Score = 29.9 bits (64), Expect = 0.017
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 10/157 (6%)

Query: 6   YRGVWECARHVYRAEGLRAFYRSYGTQIAMNVPFQALHFVTYE-WCQSVLNPARKYDPRX 64
           Y+G+ +C   + + +G  +++R     +    P QAL+F   + + Q  L    K     
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112

Query: 65  XXXXXXXXXXXXXXXTT-----PLDVCKTVLNTQESAARAD----GLLEAASQVMRATGP 115
                          T+     PLD  +T L      A  +    GL    +++ +A G 
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI 172

Query: 116 LGFFKGVQARVLYQMPAAAICWLTYETFKHMLGNTKE 152
            G ++G    V   +   A  +  Y+T + ML + K+
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKK 209


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.131    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,050
Number of Sequences: 429
Number of extensions: 1230
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 198
length of database: 140,377
effective HSP length: 55
effective length of query: 143
effective length of database: 116,782
effective search space: 16699826
effective search space used: 16699826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)