GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002265-TA|BGIBMGA002265-PA|IPR003128|Villin headpiece,
IPR007122|Gelsolin
         (172 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   6.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   6.1  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 128  DVDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNELKRRARLF 172
            D  RLN+E+ L      +     R  F ++P  R N LK   ++F
Sbjct: 2131 DPSRLNIEQELQKPSGRSFACKKRWGFLQMPCTRENFLKVTLQVF 2175


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 36  GMGDKTHSTDFSSGKSDISAGSITDVDRS-AVTTEAG 71
           G G +  S DFS+G S I    +TD DR+  VT E G
Sbjct: 478 GFGPRECS-DFSTGISVIPIRLLTDADRTWLVTAEYG 513


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,670
Number of Sequences: 5004
Number of extensions: 22871
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 2
length of query: 172
length of database: 2,362,478
effective HSP length: 68
effective length of query: 104
effective length of database: 2,022,206
effective search space: 210309424
effective search space used: 210309424
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)