Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002265-TA|BGIBMGA002265-PA|IPR003128|Villin headpiece,
IPR007122|Gelsolin
(172 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1062 - 30498158-30498271,30498358-30498518,30498606-304989... 49 2e-06
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 46 2e-05
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 44 5e-05
03_03_0001 + 13611070-13611172,13611812-13611873,13612001-136120... 41 5e-04
10_08_0260 - 16290798-16290893,16292284-16292570,16293248-162939... 27 8.1
03_02_0972 - 12816807-12817016,12817099-12817215,12817963-128181... 27 8.1
>04_04_1062 -
30498158-30498271,30498358-30498518,30498606-30498924,
30499412-30499477,30499601-30499726,30499821-30499961,
30500482-30500535,30501508-30501636,30501733-30501870,
30501993-30502061,30502135-30502203,30502468-30502623,
30503795-30503895,30503986-30504136,30504475-30504520,
30504539-30504637,30504796-30504928,30505018-30505195,
30505282-30505524,30505612-30505680,30505986-30506085,
30506898-30507007
Length = 923
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 108 EPAKLYPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNELKR 167
E + +YPY L T+ PD+D E +LS EF + R F LP+W++N LK
Sbjct: 859 ENSTIYPYERLTTTSDDPAPDIDVTKREVYLSSVEFTEKFGMTRASFKNLPKWKQNRLKS 918
Query: 168 RARLF 172
+LF
Sbjct: 919 DLQLF 923
>06_03_0999 - 26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 108 EPAKLYPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNELKR 167
E +YPY L ++ D+D E +LS AEF + ++ F +LP+W++N LK
Sbjct: 940 EGLPVYPYERLRTSSINPVTDIDVTKRETYLSAAEFRERFGMTKEAFAKLPKWKQNRLKI 999
Query: 168 RARLF 172
+LF
Sbjct: 1000 ALQLF 1004
>08_01_0871 +
8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 108 EPAKLYPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNELKR 167
E +YPY L+ T ++D E +LS AEF+ + ++ F +LP+W++N +K
Sbjct: 889 EGLPVYPYDRLITTAADPVTEIDVTRRETYLSSAEFKDKFGMTKEAFSKLPKWKQNRMKI 948
Query: 168 RARLF 172
+LF
Sbjct: 949 ALQLF 953
>03_03_0001 + 13611070-13611172,13611812-13611873,13612001-13612072,
13612158-13612394,13612473-13612650,13612731-13612863,
13613686-13613845,13613925-13614078,13614159-13614262,
13614354-13614512,13615399-13615467,13615543-13615611,
13615772-13615909,13616044-13616124,13616805-13616933,
13617717-13617864,13618007-13618017,13618094-13618234,
13618314-13618439,13619164-13619220,13619355-13619453,
13619540-13619762,13620236-13620480,13621325-13621438
Length = 1003
Score = 41.1 bits (92), Expect = 5e-04
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 129 VDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNELKRRARLF 172
+D E +LSD+EF+ + I +++FY+ P W++ KR+ LF
Sbjct: 960 IDYKRRETYLSDSEFQTVFGITKEEFYQQPGWKQELQKRKHDLF 1003
>10_08_0260 -
16290798-16290893,16292284-16292570,16293248-16293901,
16294999-16295546,16295900-16295961,16296062-16296481
Length = 688
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 126 PPDVDRLNLERHLSDAEF-EAILQINRQDFYRLPQ 159
PP++ +LN H AEF E ILQI D L +
Sbjct: 555 PPNMAKLNQTEHQKSAEFAEWILQIGNGDTISLDE 589
>03_02_0972 -
12816807-12817016,12817099-12817215,12817963-12818111,
12818192-12818405,12818505-12818666
Length = 283
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 4 APRPGYGLRSSTLPAGVGRHCNVRAEGDFTFS 35
A P + +S G G H N+R EG +T S
Sbjct: 174 AKNPSIPINASHFTVGYGAHHNLRLEGSYTNS 205
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,628,932
Number of Sequences: 37544
Number of extensions: 164275
Number of successful extensions: 403
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 6
length of query: 172
length of database: 14,793,348
effective HSP length: 77
effective length of query: 95
effective length of database: 11,902,460
effective search space: 1130733700
effective search space used: 1130733700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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