GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002265-TA|BGIBMGA002265-PA|IPR003128|Villin headpiece,
IPR007122|Gelsolin
         (172 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9086| Best HMM Match : No HMM Matches (HMM E-Value=.)               58   5e-09
SB_39000| Best HMM Match : TolA (HMM E-Value=0.55)                     29   1.6  
SB_34638| Best HMM Match : Fork_head (HMM E-Value=0)                   29   2.1  
SB_47058| Best HMM Match : Fork_head (HMM E-Value=0)                   29   2.1  
SB_32287| Best HMM Match : fn3 (HMM E-Value=1e-14)                     27   8.3  

>SB_9086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 24/60 (40%), Positives = 36/60 (60%)

Query: 113 YPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNELKRRARLF 172
           + Y  L+ TN R P  VD+  LE +L+D EF  +  + R +FY +P W+RN +K+   LF
Sbjct: 273 FSYDELVTTNPRPPKGVDKTKLETYLTDEEFMKVFSVTRFEFYAMPTWKRNNMKKSVDLF 332


>SB_39000| Best HMM Match : TolA (HMM E-Value=0.55)
          Length = 576

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 100 MATSHLLHEPAKLYPYHLLLITNY-RLPPDVDRLNLERHLSDAE----FEAILQINRQDF 154
           M    L  E  K    H   +  + R   ++ + + E+ L DAE    FE  L+I++Q  
Sbjct: 354 MEMEALAKEKVKRKEVHAKQVDEWSRFEEELKQRDAEKTLRDAEKLKDFERHLEIDKQTA 413

Query: 155 YRLPQWRRNELKRR 168
           Y + + RR+E ++R
Sbjct: 414 YEISERRRSEREKR 427


>SB_34638| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 312

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 113 YPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQI--NRQDFYRLPQWRRNELKRRAR 170
           Y +  L  T  RLPP + R +L R +SD E    L +  +R +FY  P    +E K R+R
Sbjct: 209 YHHFSLYDTVTRLPPSLHR-SL-RGVSDYEMRKALDLRASRPNFYESPSSAFSETKSRSR 266

Query: 171 LF 172
            F
Sbjct: 267 GF 268


>SB_47058| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 312

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 113 YPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQI--NRQDFYRLPQWRRNELKRRAR 170
           Y +  L  T  RLPP + R +L R +SD E    L +  +R +FY  P    +E K R+R
Sbjct: 209 YHHFSLYDTVTRLPPSLHR-SL-RGVSDYEMRKALDLRASRPNFYESPSSAFSETKSRSR 266

Query: 171 LF 172
            F
Sbjct: 267 GF 268


>SB_32287| Best HMM Match : fn3 (HMM E-Value=1e-14)
          Length = 246

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 100 MATSHLLHEPAKLYPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRLPQ 159
           MA +H+   P  +  + + LI   + PP   R+N +    +AE   I   +R D Y++  
Sbjct: 101 MARNHIGASPPVVGEFDMKLIP--QKPPTFVRVNYDEFQREAEVTWIRVASRVDGYKVYY 158

Query: 160 WRRNEL 165
           W  + +
Sbjct: 159 WGEDNI 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,179,806
Number of Sequences: 59808
Number of extensions: 177778
Number of successful extensions: 375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 16,821,457
effective HSP length: 77
effective length of query: 95
effective length of database: 12,216,241
effective search space: 1160542895
effective search space used: 1160542895
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)