GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002265-TA|BGIBMGA002265-PA|IPR003128|Villin headpiece,
IPR007122|Gelsolin
         (172 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068867-1|AAC35506.1|  639|Caenorhabditis elegans putative acti...    70   8e-13
Z49887-3|CAC70079.1|  639|Caenorhabditis elegans Hypothetical pr...    69   1e-12
Z49887-2|CAA90057.1|  625|Caenorhabditis elegans Hypothetical pr...    69   1e-12
U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical pr...    44   6e-05
AF125963-5|AAK95886.1|  228|Caenorhabditis elegans Hypothetical ...    28   4.1  

>AF068867-1|AAC35506.1|  639|Caenorhabditis elegans putative
           actin-binding proteinUNC-115 protein.
          Length = 639

 Score = 70.1 bits (164), Expect = 8e-13
 Identities = 32/67 (47%), Positives = 45/67 (67%)

Query: 106 LHEPAKLYPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNEL 165
           + +PAK Y    L  TN  LP DVDR +LERHL   +FE I +++  +FY+LP+W+R  L
Sbjct: 573 MSKPAKQYDLLFLQTTNSELPEDVDRQHLERHLPRDQFEEIFKMSLIEFYKLPEWKRINL 632

Query: 166 KRRARLF 172
           KR+ +LF
Sbjct: 633 KRKHKLF 639


>Z49887-3|CAC70079.1|  639|Caenorhabditis elegans Hypothetical
           protein F09B9.2b protein.
          Length = 639

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 32/67 (47%), Positives = 45/67 (67%)

Query: 106 LHEPAKLYPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNEL 165
           + +PAK Y    L  TN  LP DVDR +LERHL   +FE I +++  +FY+LP+W+R  L
Sbjct: 573 MSKPAKQYDLLFLQTTNSDLPEDVDRQHLERHLPRDQFEEIFKMSLIEFYKLPEWKRINL 632

Query: 166 KRRARLF 172
           KR+ +LF
Sbjct: 633 KRKHKLF 639


>Z49887-2|CAA90057.1|  625|Caenorhabditis elegans Hypothetical
           protein F09B9.2a protein.
          Length = 625

 Score = 69.3 bits (162), Expect = 1e-12
 Identities = 32/67 (47%), Positives = 45/67 (67%)

Query: 106 LHEPAKLYPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRLPQWRRNEL 165
           + +PAK Y    L  TN  LP DVDR +LERHL   +FE I +++  +FY+LP+W+R  L
Sbjct: 559 MSKPAKQYDLLFLQTTNSDLPEDVDRQHLERHLPRDQFEEIFKMSLIEFYKLPEWKRINL 618

Query: 166 KRRARLF 172
           KR+ +LF
Sbjct: 619 KRKHKLF 625


>U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical
           protein C10H11.1 protein.
          Length = 918

 Score = 44.0 bits (99), Expect = 6e-05
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 98  PNMATSHLLHEPAKLYPYHLLLITNYRLPPDVDRLNLERHLSDAEFEAILQINRQDFYRL 157
           P    S LL E  + +    L      LP  +D   LE +L+D +F  + +I R +FY  
Sbjct: 845 PPRDVSDLLKERCRTFSLEELK-ERTSLPAGMDMRRLESYLTDDDFMKVFKIERSEFYAQ 903

Query: 158 PQWRRNELKRRARLF 172
             W++N+ ++R  LF
Sbjct: 904 KTWKQNDARKRVGLF 918


>AF125963-5|AAK95886.1|  228|Caenorhabditis elegans Hypothetical
           protein Y38A10A.7 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 137 HLSDAEFEAILQI---NRQDFYRLPQWRRNELKRRARL 171
           HLSD +FE +  +   N  D Y   QW  +E  +R  L
Sbjct: 76  HLSDEDFEWVFSLFKENMYDMYHKSQWGYDENSKRNEL 113


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,701,372
Number of Sequences: 27539
Number of extensions: 126642
Number of successful extensions: 243
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 239
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 12,573,161
effective HSP length: 77
effective length of query: 95
effective length of database: 10,452,658
effective search space: 993002510
effective search space used: 993002510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)