GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002262-TA|BGIBMGA002262-PA|IPR003323|Ovarian tumour,
otubain
         (429 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   4.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   5.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   5.5  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   5.5  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   7.3  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 136 LINWSLEFTVNLGSRLYALWNRSA 159
           ++NW++  T  +G  L   WN SA
Sbjct: 438 MMNWNMPSTSVVGDMLNMNWNPSA 461


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 15/65 (23%), Positives = 27/65 (41%)

Query: 322 EQQDDNEDMIYLPLTDSEGKLLPVHFLTCDEMSEAESXXXXXXXXXETSGGLAAARRPSL 381
           E   +  + I +PL+ S G+ LP +F      S   S           +  +  A+ P++
Sbjct: 31  ENLSNKSNSITVPLSISTGQRLPANFSFGQVNSPPSSTSSGSLGQFPATPVIDPAKDPAI 90

Query: 382 APSLL 386
             +LL
Sbjct: 91  YSNLL 95


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 304 SALVPIEPYSHRHTYICREQQ 324
           S LV +E   HR  Y+CR ++
Sbjct: 95  SQLVELEREFHRSKYLCRPRR 115


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 304 SALVPIEPYSHRHTYICREQQ 324
           S LV +E   HR  Y+CR ++
Sbjct: 115 SQLVELEREFHRSKYLCRPRR 135


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 99  TFSLPADIEELPA 111
           +FSLP D+E LP+
Sbjct: 47  SFSLPLDLEPLPS 59


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,676
Number of Sequences: 317
Number of extensions: 4310
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 429
length of database: 114,650
effective HSP length: 59
effective length of query: 370
effective length of database: 95,947
effective search space: 35500390
effective search space used: 35500390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)