GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002262-TA|BGIBMGA002262-PA|IPR003323|Ovarian tumour,
otubain
         (429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   2.2  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    26   8.8  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    26   8.8  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 108 ELPAAIQEQLFSELLDREAQQTLEADPPLINWSLEFTVNLGSRLYALWNRSAGDC 162
           +LP A  ++L   +   +  +TL  +P     S EF +     LY + NR   DC
Sbjct: 768 KLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQEFVMPTVEELYLVDNRLGNDC 822


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 196 FYERWQAWERMQASLLHYAPEEGQLRAEWSRILASAARPGTPLHQIHV 243
           F  R +AWE  Q +++H A      R + +R L   A+ G  +++I V
Sbjct: 21  FLSRVRAWEYRQMNVIHRASRPS--RPDKARRLGYKAKQGYVIYRIRV 66


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 196 FYERWQAWERMQASLLHYAPEEGQLRAEWSRILASAARPGTPLHQIHV 243
           F  R +AWE  Q +++H A      R + +R L   A+ G  +++I V
Sbjct: 21  FLSRVRAWEYRQMNVIHRASRPS--RPDKARRLGYKAKQGYVIYRIRV 66


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,062
Number of Sequences: 5004
Number of extensions: 82726
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 3
length of query: 429
length of database: 2,362,478
effective HSP length: 75
effective length of query: 354
effective length of database: 1,987,178
effective search space: 703461012
effective search space used: 703461012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)