Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002262-TA|BGIBMGA002262-PA|IPR003323|Ovarian tumour,
otubain
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0364 + 17217631-17217833,17218134-17218308,17218391-172184... 30 3.1
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 30 3.1
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 29 5.4
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 29 5.4
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 7.2
04_03_0397 - 15362353-15363383,15385301-15385910,15386890-153870... 29 7.2
06_03_0449 + 20907491-20910146,20910313-20910782 29 9.5
>10_08_0364 +
17217631-17217833,17218134-17218308,17218391-17218474,
17218561-17218802,17218883-17219108,17219246-17219325,
17219408-17219492,17219665-17219796,17219927-17220040,
17220123-17220170,17220413-17220497,17220722-17220834
Length = 528
Score = 30.3 bits (65), Expect = 3.1
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 314 HRHTYICREQQDDN---EDMIYLPLTDSEGKLLPVHFLTCDEMSEAESXXXXXXXXXETS 370
HRH YI R+ + DN + +L L+D G P+ + +++E + T+
Sbjct: 228 HRHNYIHRDIKPDNLLLDRHGHLRLSDF-GLCKPLDYSNFPDLNEKD---VTSTKPQSTN 283
Query: 371 GGLAAARRPSLAPSLLQAQMLEEWLNHYRRLAQQTRG 407
G R+ S+ P Q + LE W + R LA T G
Sbjct: 284 GD---GRQQSM-PKRTQQEQLEHWQKNRRTLAYSTVG 316
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 7 VHHSLWGLIVLQAQGLRRSHRMPPLPFPKLDRFQRQEILSTLLSRISGGGPGLKRSPSYI 66
+ H GL L+ L H PPL + + L++ +R GG PG+ R S +
Sbjct: 715 MEHVAQGLNALEPNLLNARHTGPPLN-ASANTVSGNQQLASAPNRF-GGAPGVARPTSTV 772
Query: 67 APDLASAIRR 76
A +AS++ R
Sbjct: 773 ANQVASSLSR 782
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 29.5 bits (63), Expect = 5.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 253 PIIVYGVNVVNSFRGEALGFARFQGIYLPLLWDPQFCSK--SPLCLGYTRGHFSALVPIE 310
P+ Y V + G LG R++ LP+L + + SK +RGH++ E
Sbjct: 22 PLQTYSVRIQKGTSGSRLGKCRYKDFRLPILENMGWLSKIFKGSVNRVSRGHYNGNTH-E 80
Query: 311 PYSHRHTYICREQQDDNEDM 330
+S HT E D+ED+
Sbjct: 81 GHSAWHTK-AYEHDSDHEDI 99
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 29.5 bits (63), Expect = 5.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 185 LADSLHQAHRSFYERWQAWERMQASLLHYAPEEG 218
LA LHQ H E+ W M+ ++ + APE G
Sbjct: 940 LARVLHQDHSDMLEKSSGWATMRGTIGYAAPEYG 973
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 7.2
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 15 IVLQAQGLRRSHRMPPLPFPKLDRFQRQEILSTLLSRISGGGPGLKRSPSYIAPDLASA 73
++L+ + RR HR P P P L R ++L+++ S ++ GP + + +A +S+
Sbjct: 24 LILRRRQRRRHHRHRPRPCPTL-RASLSDLLASIPSSLALVGPAAAAAVAAVASSFSSS 81
>04_03_0397 -
15362353-15363383,15385301-15385910,15386890-15387096,
15388287-15388313,15388397-15388471
Length = 649
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 386 LQAQMLEEWLNHYRRLAQQTRGPFPPRLQAAAAEYSSDPDTDEE 429
L+ Q +E L ++L QQ P PPR + E + DP ++ E
Sbjct: 285 LEQQEIERQLPSRQQLEQQEIKPMPPRTRHGRHEPTPDPVSENE 328
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 28.7 bits (61), Expect = 9.5
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 10 SLWGLIVLQAQGLRRSHRMPPLPFPKLDRFQRQEILSTLLSRISGGGPGLKRSPSYIAPD 69
SL L +L G + + +P F R Q+ E L + +SG P + + + D
Sbjct: 249 SLTELTLLDMSGNKLTGAIPAWVF----RHQKLERLYLYENSLSGELPRNVTTANLVEID 304
Query: 70 LASAIRRHIAGCLRQKKGNFP-----CRYINEFCTFSLPADIEELPAAIQEQLFSELLDR 124
L+S + G + + GN Y N+ T ++PA I LP +LF L
Sbjct: 305 LSS---NQLGGEISEDFGNLKNLSLLFLYFNKV-TGAIPASIGRLPNLTDLRLFGNELSG 360
Query: 125 EAQQTLEADPPLINWSL 141
E L + PL N+ +
Sbjct: 361 ELPPELGKNSPLANFEV 377
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,468
Number of Sequences: 37544
Number of extensions: 616713
Number of successful extensions: 1326
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 8
length of query: 429
length of database: 14,793,348
effective HSP length: 84
effective length of query: 345
effective length of database: 11,639,652
effective search space: 4015679940
effective search space used: 4015679940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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