GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002262-TA|BGIBMGA002262-PA|IPR003323|Ovarian tumour,
otubain
         (429 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)                    292   3e-79
SB_24303| Best HMM Match : No HMM Matches (HMM E-Value=.)             111   8e-25
SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)               75   1e-13
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                68   2e-11
SB_7467| Best HMM Match : PAH (HMM E-Value=4.9)                        31   1.8  
SB_3088| Best HMM Match : PAH (HMM E-Value=4.9)                        31   1.8  
SB_41468| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  
SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)           30   3.1  
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.2  
SB_36808| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    29   5.5  
SB_9109| Best HMM Match : TAFH (HMM E-Value=8.5)                       29   7.3  
SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23)                   29   7.3  

>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 1007

 Score =  292 bits (717), Expect = 3e-79
 Identities = 139/278 (50%), Positives = 187/278 (67%), Gaps = 5/278 (1%)

Query: 130  LEADPPLINWSLEFTVNLGSRLYALWNRSAGDCLPDAVCQAAYGVFDRNNALRTALADSL 189
            LE + P+INWS+E T  LGSR++ LW  SAGDCL D++ QA YGVFD++N LR AL +SL
Sbjct: 731  LEVESPVINWSVEITEQLGSRIFPLWKSSAGDCLLDSLLQATYGVFDKDNTLRKALFESL 790

Query: 190  HQAHRSFYERWQAWERMQASLLHYAPEEGQLRAEWSRILASAARPGTPLHQIHVFVLAHV 249
             +    F+ R++ WE MQA  L Y+ +E Q   +W+ IL+ A++PGT L Q HVF LAH+
Sbjct: 791  SEGSSRFFARYKEWESMQAETLQYSLDEDQWEQDWASILSLASQPGTSLEQTHVFALAHI 850

Query: 250  MRRPIIVYGVNVVNSFRGEALGFARFQGIYLPLLWDPQFCSKSPLCLGYTRGHFSALVPI 309
            +RRP+I+YGV  V SFRGE LG ARFQG+YLPLLW+  FC K+P+ LGYTRGHFSALV +
Sbjct: 851  LRRPVIIYGVKYVKSFRGETLGLARFQGVYLPLLWERSFCWKNPVVLGYTRGHFSALVAM 910

Query: 310  EPYSHRHTYI---CREQQDDNEDMIYLPLTDSEGKLLPVHFLTCDEMSEAESXXXXXXXX 366
            E  +     I      + +DN  + YLPL D EG+LLPVHFL+  E+   E         
Sbjct: 911  EVDTDASNDIGAHAHVENNDNVHVTYLPLVDHEGRLLPVHFLSASEVGSEEMLLRDWLDC 970

Query: 367  XETSGG-LAAARRPSLAPSLLQAQMLEEWLNHYRRLAQ 403
              T GG L A +R +  P+L+  QM+++WL+ YR+L++
Sbjct: 971  CVTEGGVLVAQQRVTPRPALVN-QMIDDWLDRYRKLSK 1007


>SB_24303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score =  111 bits (268), Expect = 8e-25
 Identities = 47/86 (54%), Positives = 64/86 (74%)

Query: 106 IEELPAAIQEQLFSELLDREAQQTLEADPPLINWSLEFTVNLGSRLYALWNRSAGDCLPD 165
           I++ P  +Q QLF +  D+E Q+ LE + P+INWS+E T  LGSR++ LWNRSAGDCL D
Sbjct: 2   IQDFPGRVQRQLFEDFFDKEVQRVLEVESPVINWSVEITEQLGSRIFPLWNRSAGDCLLD 61

Query: 166 AVCQAAYGVFDRNNALRTALADSLHQ 191
           ++ QA YGVFD++N LR AL +SL +
Sbjct: 62  SLLQATYGVFDKDNTLRKALFESLSE 87


>SB_9533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 35/70 (50%), Positives = 46/70 (65%)

Query: 238 LHQIHVFVLAHVMRRPIIVYGVNVVNSFRGEALGFARFQGIYLPLLWDPQFCSKSPLCLG 297
           L +IHVFVLAHV+RRPI+V     +  F G+A+    F GI+LPL   P+ C K+PL L 
Sbjct: 323 LEEIHVFVLAHVLRRPIVVIAEQFLRDFSGDAIAPIPFGGIFLPLECPPEQCYKNPLVLT 382

Query: 298 YTRGHFSALV 307
           +   HFSA+V
Sbjct: 383 FESAHFSAVV 392


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 8/85 (9%)

Query: 268 EALGFARFQGIYLPLLWDPQFCSKSPLCLGYTRGHFSALVPIEPYSHRHTYICREQQDDN 327
           E+L      GIYLPL WDP  C K+PL +GY +GHF+ALV IE  +            D 
Sbjct: 146 ESLSPVNLGGIYLPLNWDPVECVKTPLLIGYAQGHFTALVSIEDGN--------AGAGDT 197

Query: 328 EDMIYLPLTDSEGKLLPVHFLTCDE 352
             +  +PL   +G  LPVHFL  DE
Sbjct: 198 HKIHGVPLVKPDGSALPVHFLLSDE 222


>SB_7467| Best HMM Match : PAH (HMM E-Value=4.9)
          Length = 125

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 89  FPCRYINEFCTFSLPADIEELPAAIQEQLFSELL 122
           + CR I +  TF LPA+  ELPA +      E L
Sbjct: 22  YTCRDITQIITFELPANFTELPAELPASFTRERL 55


>SB_3088| Best HMM Match : PAH (HMM E-Value=4.9)
          Length = 125

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 89  FPCRYINEFCTFSLPADIEELPAAIQEQLFSELL 122
           + CR I +  TF LPA+  ELPA +      E L
Sbjct: 22  YTCRDITQIITFELPANFTELPAELPASFTRERL 55


>SB_41468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 89  FPCRYINEFCTFSLPADIEELPAAI 113
           + CR I +  TF LPA+  ELPA +
Sbjct: 22  YTCRDITQIITFELPANFTELPAEL 46


>SB_40645| Best HMM Match : zf-C2H2 (HMM E-Value=3.30006e-42)
          Length = 554

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 89  FPCRYINEFCTFSLPADIEELPAAI 113
           + CR I +  TF LPA+  ELPA +
Sbjct: 22  YTCRDITQIITFELPANFTELPAEL 46


>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 76  RHIAGCLRQKKGNFPCRYINEFCTFSLPADIEELPAAI 113
           R I    R  + N  CR I +  TF LPA+  ELPA +
Sbjct: 4   RTIVSKFRDNRPN-TCRDITQINTFELPANFTELPAEL 40


>SB_36808| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 91  CRYINEFCTFSLPADIEELPAAI 113
           CR I +  TF LPA+  ELPA +
Sbjct: 24  CRDITQIITFELPANFTELPAEL 46


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 146 NLGSRLYALWNRSAGDCLPDAVCQAAYGVFDRNNALRTALADSLHQAHRSFYERWQAWER 205
           N+  RL  +     G CL  AV +A  G     +ALRT L+ +       F +    +  
Sbjct: 168 NMEERLVPIHVDGDGHCLVHAVSRALIGREIFWHALRTNLSSN-------FQQNLAKYRA 220

Query: 206 MQASLLHYAPEEGQLRAEWSRILASAARPGTPLHQIHVFVLAHVMRRPIIV 256
           +    +  A E   +  E S    +       +  IHVF LA+V+ RPI++
Sbjct: 221 LFKDFIDEA-EWRDIIKEASPNFVAPEGQSLGMRNIHVFGLANVLHRPIVL 270


>SB_9109| Best HMM Match : TAFH (HMM E-Value=8.5)
          Length = 107

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 91  CRYINEFCTFSLPADIEELPA 111
           CR I +  TF LPA+  ELPA
Sbjct: 24  CRDITQIITFELPANFTELPA 44


>SB_32619| Best HMM Match : FCH (HMM E-Value=7.1e-23)
          Length = 334

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 201 QAWERMQASLLHYAPEEGQLRAEWSRILASAARPGTPLHQIHVFVLAHVMRR 252
           QAW R    LL+  PE G  +  W  + + A +    + Q+H+ + + ++ R
Sbjct: 93  QAWSRKWLDLLNKGPEYGSCKDSWVHVTSEAEQ----VAQVHINLQSTLLSR 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,695
Number of Sequences: 59808
Number of extensions: 624649
Number of successful extensions: 955
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 13
length of query: 429
length of database: 16,821,457
effective HSP length: 84
effective length of query: 345
effective length of database: 11,797,585
effective search space: 4070166825
effective search space used: 4070166825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)