Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002262-TA|BGIBMGA002262-PA|IPR003323|Ovarian tumour,
otubain
(429 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006792-1|AAF60741.2| 642|Caenorhabditis elegans Hypothetical ... 101 7e-22
U64608-4|AAB04595.2| 282|Caenorhabditis elegans Hypothetical pr... 32 0.90
Z83114-9|CAB05553.2| 941|Caenorhabditis elegans Hypothetical pr... 31 2.1
Z83114-8|CAJ76944.1| 875|Caenorhabditis elegans Hypothetical pr... 31 2.1
AL021483-8|CAI79173.1| 941|Caenorhabditis elegans Hypothetical ... 31 2.1
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 30 3.6
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 30 3.6
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 30 3.6
>AC006792-1|AAF60741.2| 642|Caenorhabditis elegans Hypothetical
protein Y50C1A.1 protein.
Length = 642
Score = 101 bits (243), Expect = 7e-22
Identities = 87/267 (32%), Positives = 123/267 (46%), Gaps = 39/267 (14%)
Query: 100 FSLPADIEELPAAIQEQLFSELLDREAQQTLEADPPLINWSLEFTVNLGSRLYALWNRSA 159
F LP D P + L +L++ + Q+ LEA L NW +F G +LY L
Sbjct: 79 FYLP-DFGGFPNEFRTFLEKDLIETQTQKRLEASRHL-NWWHQF----GQKLYPLSTTGD 132
Query: 160 GDCLPDAVCQAAYGVFDRNNALRTALADSLHQAHR--SFYERWQAWERM--QASLLHYAP 215
G+CL A +GV DR +LR L + L R + RW+ E Q++ L
Sbjct: 133 GNCLLHAASLGMWGVHDRQLSLRETLYELLTNGARKEAIRRRWKWVENHMNQSNGLALTL 192
Query: 216 EEGQLRAEWSRILA-SAARP------GT--------PLHQIHVFVLAHVMRRPIIVYGVN 260
E + EW +L S+ P G+ L IHVF LAHV++RP++V
Sbjct: 193 SENEWELEWDVVLGLSSPLPRKQEDNGSNSTDQIYESLEAIHVFALAHVLKRPVVVVSDT 252
Query: 261 VVNSFRGEALGFARFQGIYLPLLWDPQFCSKSPLCLGYTRGHFSALVPIEPYSHRHTYIC 320
++ + +GE L F GIYLPL P C +SPL L Y HFS LV +
Sbjct: 253 ILRNAKGEELSPVAFGGIYLPLECPPSQCHRSPLVLCYDSAHFSPLV-----------LM 301
Query: 321 REQQDDNEDMIYLPLTDSEGKLLPVHF 347
R + ++ + +P+ D LLPVHF
Sbjct: 302 RTETNNKQ---IIPIIDVNRNLLPVHF 325
>U64608-4|AAB04595.2| 282|Caenorhabditis elegans Hypothetical
protein T22B7.3 protein.
Length = 282
Score = 31.9 bits (69), Expect = 0.90
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 125 EAQQTLEADPPLINWS-LEFTV-NLGSRLYALWNRSAGDCLPDAVCQAAYGVFDRNNALR 182
+ ++ + + L W L+ T+ N G+++ + + A + LPD V A + N A
Sbjct: 36 DMKRGVNREKALKQWDQLKNTIENSGAKVEVMESTGA-ESLPDIVFAANAAIIKGNKAYL 94
Query: 183 TALADSLHQAHRSFYERWQAWERMQASLLHYAPEEGQLRAEW 224
+ A Q R FYE+W + P EG A W
Sbjct: 95 ASFAHPERQGERYFYEQWFTNNGYECVGDQDIPSEGAGDALW 136
>Z83114-9|CAB05553.2| 941|Caenorhabditis elegans Hypothetical
protein K09B11.9a protein.
Length = 941
Score = 30.7 bits (66), Expect = 2.1
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 105 DIEELPAAIQEQLFSELLDREAQQTLEADP-PLINWSLEFTVNLGSRLYALWNRSAGDCL 163
+IE+L A +Q + ++ + E++ N L + RL W A
Sbjct: 738 EIEKLNAEVQNKQMEREVENLRVRLEESEAFKTQNEVLNSQLVESQRLTQQWYAEAERYK 797
Query: 164 PDAVCQAAYGVFDRNNALRTALADSLHQAHRSFYER---WQAWERMQASLLHYAPEEGQL 220
A AY + N + T LA Q + + +QA+E+ ++LHY E L
Sbjct: 798 QWAQQWQAYQLAQLPNGVETGLAQLQQQVNELEQQLGFGYQAFEQQSQTMLHYTSENANL 857
Query: 221 RAEWSRILASAARPGTPLHQIHV 243
+ ++ A+ A + Q+++
Sbjct: 858 KDRLAKTEAALAEANYKIEQLNL 880
>Z83114-8|CAJ76944.1| 875|Caenorhabditis elegans Hypothetical
protein K09B11.9b protein.
Length = 875
Score = 30.7 bits (66), Expect = 2.1
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 105 DIEELPAAIQEQLFSELLDREAQQTLEADP-PLINWSLEFTVNLGSRLYALWNRSAGDCL 163
+IE+L A +Q + ++ + E++ N L + RL W A
Sbjct: 672 EIEKLNAEVQNKQMEREVENLRVRLEESEAFKTQNEVLNSQLVESQRLTQQWYAEAERYK 731
Query: 164 PDAVCQAAYGVFDRNNALRTALADSLHQAHRSFYER---WQAWERMQASLLHYAPEEGQL 220
A AY + N + T LA Q + + +QA+E+ ++LHY E L
Sbjct: 732 QWAQQWQAYQLAQLPNGVETGLAQLQQQVNELEQQLGFGYQAFEQQSQTMLHYTSENANL 791
Query: 221 RAEWSRILASAARPGTPLHQIHV 243
+ ++ A+ A + Q+++
Sbjct: 792 KDRLAKTEAALAEANYKIEQLNL 814
>AL021483-8|CAI79173.1| 941|Caenorhabditis elegans Hypothetical
protein K09B11.9a protein.
Length = 941
Score = 30.7 bits (66), Expect = 2.1
Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 105 DIEELPAAIQEQLFSELLDREAQQTLEADP-PLINWSLEFTVNLGSRLYALWNRSAGDCL 163
+IE+L A +Q + ++ + E++ N L + RL W A
Sbjct: 738 EIEKLNAEVQNKQMEREVENLRVRLEESEAFKTQNEVLNSQLVESQRLTQQWYAEAERYK 797
Query: 164 PDAVCQAAYGVFDRNNALRTALADSLHQAHRSFYER---WQAWERMQASLLHYAPEEGQL 220
A AY + N + T LA Q + + +QA+E+ ++LHY E L
Sbjct: 798 QWAQQWQAYQLAQLPNGVETGLAQLQQQVNELEQQLGFGYQAFEQQSQTMLHYTSENANL 857
Query: 221 RAEWSRILASAARPGTPLHQIHV 243
+ ++ A+ A + Q+++
Sbjct: 858 KDRLAKTEAALAEANYKIEQLNL 880
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 29.9 bits (64), Expect = 3.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 155 WNRSAGDCLPDAVCQAAYGVFDRN 178
W ++ G C PD+ + + VFD N
Sbjct: 167 WKQALGGCFPDSYAERLFAVFDEN 190
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 29.9 bits (64), Expect = 3.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 155 WNRSAGDCLPDAVCQAAYGVFDRN 178
W ++ G C PD+ + + VFD N
Sbjct: 167 WKQALGGCFPDSYAERLFAVFDEN 190
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 29.9 bits (64), Expect = 3.6
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 155 WNRSAGDCLPDAVCQAAYGVFDRN 178
W ++ G C PD+ + + VFD N
Sbjct: 167 WKQALGGCFPDSYAERLFAVFDEN 190
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.136 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,994,267
Number of Sequences: 27539
Number of extensions: 456331
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 9
length of query: 429
length of database: 12,573,161
effective HSP length: 83
effective length of query: 346
effective length of database: 10,287,424
effective search space: 3559448704
effective search space used: 3559448704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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