GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002262-TA|BGIBMGA002262-PA|IPR003323|Ovarian tumour,
otubain
         (429 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    25   1.6  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   5.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   5.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 380 SLAPSLLQAQMLEEWLNHYRRLA 402
           S++P L++  M  +WL    RLA
Sbjct: 190 SISPDLVETDMTAQWLKENSRLA 212


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 257 YGV--NVVNSFRGEALGFARFQGIYLPLLWDP 286
           YG+  N ++ FRGE +      G++  LL DP
Sbjct: 68  YGILQNWMDKFRGEEIAILYDPGMFPALLKDP 99


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 216 EEGQLRAEWSRIL 228
           +EG L A+WSR+L
Sbjct: 382 KEGGLEAQWSRVL 394


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 190 HQAHRSFYERW 200
           H+ HR  YERW
Sbjct: 162 HRGHRKDYERW 172


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,771
Number of Sequences: 429
Number of extensions: 5250
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 429
length of database: 140,377
effective HSP length: 60
effective length of query: 369
effective length of database: 114,637
effective search space: 42301053
effective search space used: 42301053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)