GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002261-TA|BGIBMGA002261-PA|IPR006578|MADF,
IPR009057|Homeodomain-like, IPR001005|Myb, DNA-binding
         (507 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    25   0.94 
AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450 ...    23   3.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   8.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   8.7  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   8.7  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   8.7  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 148 IKWVHYNTCEEVFKEC 163
           I W+   TCEEV K+C
Sbjct: 341 IVWITSETCEEVSKKC 356


>AF263515-1|AAF74207.1|  126|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 464 KRVVQEMQDVRDTSKFDKLVQSMEESNMIQRERNKIL 500
           + +VQEM+DV   +K   +   ++E   ++R   ++L
Sbjct: 20  EEIVQEMKDVLGDTKKKPVYNDLQELKYMERVIKEVL 56


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 329 SGLAVTKWRYYKDFEEIYGHQTYCTT---NNVKLVYKPNRDDYVRQLLL----FYIENVD 381
           +G+   KWR Y+DF   +  +TY +     +++      R D  R  +L    +Y++  +
Sbjct: 196 TGIFQKKWRGYEDFRRDF-LRTYWSAKRQRDIRFQIATGRYDETRGTMLSHFAYYVDMAN 254

Query: 382 KFRDPL 387
               PL
Sbjct: 255 MLTTPL 260


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 237  KDTGKPIKWPYHHFFERIYYNSNPNTGPW 265
            K TG      YH   E ++YN+N +   W
Sbjct: 1598 KQTGHVAPLYYHPEDEVVFYNANFSINYW 1626


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 286 NPRYLKKELWKEISETVGENPPDCEK 311
           N R +++E+ KE+   + E PP   K
Sbjct: 316 NHREVQEEILKEMEAVLDEEPPTYAK 341


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 286 NPRYLKKELWKEISETVGENPPDCEK 311
           N R +++E+ KE+   + E PP   K
Sbjct: 316 NHREVQEEILKEMEAVLDEEPPTYAK 341


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,996
Number of Sequences: 317
Number of extensions: 6322
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 6
length of query: 507
length of database: 114,650
effective HSP length: 60
effective length of query: 447
effective length of database: 95,630
effective search space: 42746610
effective search space used: 42746610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)