Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002261-TA|BGIBMGA002261-PA|IPR006578|MADF,
IPR009057|Homeodomain-like, IPR001005|Myb, DNA-binding
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 31 0.38
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 31 0.38
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 31 0.50
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 1.2
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 29 2.0
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 28 2.7
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 28 2.7
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 28 2.7
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 28 2.7
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 3.5
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 4.6
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 27 4.6
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 27 6.1
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p... 27 6.1
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 8.1
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 8.1
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.1 bits (67), Expect = 0.38
Identities = 31/151 (20%), Positives = 63/151 (41%), Gaps = 6/151 (3%)
Query: 285 RNPRYLKKELWKEISETVGENPPDCEKKFRNLKQTYIRIRSKVESGLAVTKWRYYKDFEE 344
+N YL + +KE+ + V C+++ R L+ + ++S E V+K + +E
Sbjct: 457 KNGVYLAESTYKELMDRVQNKDLLCQEQARKLEVLDLNVKSSREQLQYVSK-SNQEHKKE 515
Query: 345 IYGHQTYCTTNNVKLVYKPNRDDYVRQLLLFYIENVDKFRDPLIKKRTLWKKLSPQILLS 404
+ Q ++ +L + ++ ++ L+ IE K+ K T+ LS S
Sbjct: 516 VEALQLQLVNSSTELESVKSENEKLKNELVLEIEKRKKYETNEAKITTVATDLSQYYRES 575
Query: 405 PDECDRKFRNLKQTYIRLIERKRETGKNTKW 435
+ + L +T ER + +N W
Sbjct: 576 KEYIASLYEKLDRT-----ERNNKENENNFW 601
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 31.1 bits (67), Expect = 0.38
Identities = 29/151 (19%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 96 LEDRFKNINKQKTLWHDIASHVGTTADECCKKYRNLRRTYIRLLKKNRLGKEIKWVHYNT 155
L+ + + ++ T W+ IA+ +GT+ C ++R + + + + + W T
Sbjct: 335 LKKLYTLVEQEGTRWNSIANKLGTSPAACMSQWRFV----VGTSTQETIDRRKLW----T 386
Query: 156 CEEVFKECKSLPSSFLETWDDQKVRKLLLLYIENLHRLRSSTCLQKDI-WKEIALEIGT- 213
EE K + SS+ ++ +K+ L ++ I W I+ ++GT
Sbjct: 387 NEEEAKLLDLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQREIPASDSIAWHSISKKLGTK 446
Query: 214 TEYNCYHKFKNMKRAYLNWLERSKDTGKPIK 244
+ +C +++ +Y + + +D GK K
Sbjct: 447 SPESCRKQYEKTIASYSSNQRQEEDQGKKRK 477
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 30.7 bits (66), Expect = 0.50
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 15 LREDQSNVILSTNNFVNQNPQIPLQETRYVVETGENRQFIHINEPPIIVQEHDSQPQEKV 74
L+ED +V +VNQN IP+ + +T I + ++ +H + + V
Sbjct: 336 LKEDHPDVFEKLKEYVNQNKFIPIGGSWVEHDTNIPNGESLIRQ--FLLGQHFFEKEFGV 393
Query: 75 -CST--TKDVFWDRSKIRLLLKLCLEDRFKNINKQKTLWHDIASHVGTT 120
C T D F S+I + +LC DRF QK W++I S +T
Sbjct: 394 RCRTFWLPDTFGYSSQIPQICRLCGMDRFLT---QKLSWNNINSFPTST 439
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 96 LEDRFKNINKQKTLWHDIASHVGTTADECCKKYRNLRRTYIRLLKKNRLGKE 147
L+ + KN + Q+ + D+ G+ +++ + +L++TY+RLL ++ K+
Sbjct: 224 LKVKNKNPSSQELITADVDKTSGSLSEKSEVNHASLKKTYMRLLNSGKMQKK 275
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 186 YIENLHRLRSSTCLQKDIWKEIALEIGT 213
YI +H L SST QKD + I L+IGT
Sbjct: 57 YIRYIHDLLSSTSGQKDKKRIIGLDIGT 84
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 255 YYNSNPNTGPWNRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETV 302
Y P P N KIR +LD E+ F N R ++ LW + +TV
Sbjct: 35 YQQRYPKQNPTNSQKIRHILDEIYEK-TPFNNTR--RRILWLAVLKTV 79
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 138 LLKKNRLGKE-IKWVHYNTCEEVFKEC-KSLPSSFLETWD 175
L K N K+ + + +Y C+E F++C K ++E WD
Sbjct: 68 LKKDNLFSKDGLLYAYYELCQEKFEKCLKEDDEEWIELWD 107
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 266 NRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPPDCEKKFRNLKQTYIRIRS 325
N++ +LL + + N R + L+K L ++ + + E CEKK +L + + ++
Sbjct: 58 NKSDSKLLSNQVSQNDNDAR--KNLRKRLRNDVLKDLAEEIQGCEKKLESLYEEVAKAKA 115
Query: 326 K-VESGLAV 333
K VE LA+
Sbjct: 116 KAVEDQLAL 124
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 2.7
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 53 FIHINEPPIIVQEHDSQPQEKVCSTTKDVFWDRSKIRLLLKLCLEDRFKNI-NKQKTLWH 111
F +NE E + + S D+ DR+++ + L+ + K+I KQ+ + H
Sbjct: 252 FERVNEIRPDKDEENDESDVSQTSKFDDIIPDRNQLLITLRDLASESSKSIGKKQRKVLH 311
Query: 112 DIASHVGTTADECCKKYRNLRRTYIRL 138
+ +V T +E RN+ R +R+
Sbjct: 312 QVFRNVLQTIEE--PNARNILRNSVRI 336
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 3.5
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 244 KWPYHHFFERIYYNSNPNTGPWNRTKIR 271
KW Y+ + +YYN+ +T PW+ + R
Sbjct: 3860 KW-YNSTTQSVYYNATSSTVPWSNSTFR 3886
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 110 WHDIASHVGT-TADECCKKYRNLRRTYIRLLKKNRL 144
W +ASHV T + +EC K+ NL + L K +++
Sbjct: 312 WAKVASHVNTKSVEECILKFLNLPSSDKALFKMDKV 347
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 27.5 bits (58), Expect = 4.6
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 15/117 (12%)
Query: 72 EKVCSTTKDVFWDRSKIRLLLKLCLEDRFKNINKQKTLWHDIASHVGTTADECCKKYRNL 131
+++ K W + + L LC + I K+L +D +++ D C K ++
Sbjct: 100 DRLSDRVKKSEW-KDVFEIFLVLCKQASLFEIEMHKSL-NDEINYILDDQDACLKPKPSV 157
Query: 132 RRTYIRLLKK------------NRLGKEI-KWVHYNTCEEVFKECKSLPSSFLETWD 175
+ ++ L K +GK++ KW+ ++ E +EC S+ +W+
Sbjct: 158 AQLFLSWLPKLSAVYGRYCVIQENIGKKVEKWMKNSSISEYLQECDSMAKIESNSWN 214
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 316 LKQTYIRIRSKVESGLAVTKWRYYKDFEEIYG 347
+K+ Y ++ E+ L WR Y DFEE+ G
Sbjct: 267 IKRPYFHVKELDEAQLV--NWRKYLDFEEVEG 296
>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 115
Score = 27.1 bits (57), Expect = 6.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 127 KYRNLRRTYIRLLKKNRLGKEIKWVHYNTCEEVFKECKSLPSSF--LETW 174
KY R Y L+ K + K+I +EV ++C L +F +E W
Sbjct: 16 KYYKRRNCYTLLIFKYKESKKINVYKRKKSDEVVEDCNKLKCTFFMIEEW 65
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 462 EIKRVVQEMQDVRDTSKFDKLVQSMEESNMI 492
E+K ++E RD + D LVQS E+ ++
Sbjct: 94 ELKNKIREQIQERDIHEIDSLVQSRSETTIV 124
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 50 NRQFIHINEPPIIVQEHDSQPQEKVCSTTKDVFWDRSKIRLLLKLCLEDRFKNINK-QKT 108
N+ F+ + E I + D EK+ + D++ ++L+ K CLE+R + + + KT
Sbjct: 725 NKLFLTLLEDSI--GDGDVTEDEKISIARLEANIDKALLQLIQKACLEERIERVYELTKT 782
Query: 109 L 109
L
Sbjct: 783 L 783
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,931
Number of Sequences: 5004
Number of extensions: 123741
Number of successful extensions: 354
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 20
length of query: 507
length of database: 2,362,478
effective HSP length: 76
effective length of query: 431
effective length of database: 1,982,174
effective search space: 854316994
effective search space used: 854316994
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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