Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002261-TA|BGIBMGA002261-PA|IPR006578|MADF,
IPR009057|Homeodomain-like, IPR001005|Myb, DNA-binding
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0833 + 20147242-20147849,20147937-20148081,20148157-201482... 40 0.006
08_02_1049 + 23944526-23945473 35 0.18
12_01_0407 - 3219980-3221278 33 0.41
11_01_0404 + 3071412-3071464,3073572-3074970 33 0.41
02_01_0035 - 220036-221419,222050-222801 32 1.2
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 31 2.2
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 31 2.9
03_05_0874 - 28429982-28430083,28430284-28430472,28430585-284306... 31 2.9
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969... 30 5.0
08_02_0627 + 19449196-19449651,19449723-19449861,19450260-194503... 30 5.0
01_07_0255 - 42322111-42322308,42322658-42322750,42323127-423233... 30 5.0
11_01_0337 - 2519732-2521093 29 6.6
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 6.6
03_01_0092 - 731069-731434,731569-733080 29 6.6
07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934 29 8.7
01_03_0055 + 12074512-12076155 29 8.7
>04_03_0833 +
20147242-20147849,20147937-20148081,20148157-20148210,
20148297-20148388,20148957-20149093,20149210-20149464,
20149598-20149771,20149863-20149960
Length = 520
Score = 39.5 bits (88), Expect = 0.006
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 265 WNRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETV---------GENPPDCEKKFRN 315
W I LLD+Y +R + N L+ W++++ V G++ C+ K N
Sbjct: 81 WTDGAISSLLDSYTDRFEQL-NRGNLRGRDWEDVAAAVTDGQGKSSGGKSVEQCKNKIDN 139
Query: 316 LKQTY-IRIRSKVESGL-AVTKWRYYKDFEEIYGHQT 350
LK+ Y + + SG AV+ W ++K E+I G+ +
Sbjct: 140 LKKRYKVECQRLAGSGASAVSHWPWFKKMEQIVGNSS 176
>08_02_1049 + 23944526-23945473
Length = 315
Score = 34.7 bits (76), Expect = 0.18
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 264 PWNRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPPDCEKKFRNL------K 317
PW + LLDAY ER + R + LK + W+E++ V R K
Sbjct: 28 PWAHMETMHLLDAYEERWTRLRRGQ-LKAQQWEEVAADVAARCAASGAALRKTGTQCRHK 86
Query: 318 QTYIRIRSKVESGLAVTK-WRYYKDFEEI 345
+R R ++E VT W Y++ E +
Sbjct: 87 LEKLRKRYRIEGARPVTSLWPYFRRMERL 115
>12_01_0407 - 3219980-3221278
Length = 432
Score = 33.5 bits (73), Expect = 0.41
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 291 KKELWKEISETVGE-----NPPDCEKKFRNLKQTYIRIRSKVESGLA 332
KK WK IS+ +GE +P CE KF +L + Y R+ + G A
Sbjct: 144 KKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTA 190
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 33.5 bits (73), Expect = 0.41
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 291 KKELWKEISETVGE-----NPPDCEKKFRNLKQTYIRIRSKVESGLA 332
KK WK IS+ +GE +P CE KF +L + Y R+ + G A
Sbjct: 198 KKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGTA 244
>02_01_0035 - 220036-221419,222050-222801
Length = 711
Score = 31.9 bits (69), Expect = 1.2
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 83 WDRSKIRLLLKLC--LEDRFKNINKQKTLWHDIASHVGT-----TADECCKKYRNLRRTY 135
W + ++ L+++ LEDRF+ + LW ++++ + A C +K+ N+ + Y
Sbjct: 526 WPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMAAAGYRRNAKRCKEKWENINK-Y 584
Query: 136 IRLLKKNRLGKEIKWVHYNTC 156
R K++ GK+ + H TC
Sbjct: 585 FRKAKES--GKK-RPAHAKTC 602
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 31.1 bits (67), Expect = 2.2
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 71 QEKVCSTTKDVFWDRSKIRLLLKLCLEDRFKNINKQKTLWHDIASHVGTTADECCKKYRN 130
Q+K C D WD+ RL+ + ++ T +++A+ VG +
Sbjct: 282 QKKRCFVVIDDIWDKDSWRLIRCALQDSNHESRVVTTTRIYEVATQVGEVYKMHPLSHDE 341
Query: 131 LRRT-YIRLLKKNRLGKEIKWVHYNTCEEVFKECKSLPSSFL 171
++ Y R++ G+ ++ C+++ K+C +P + +
Sbjct: 342 SKKLLYTRIISGE--GESLRSTSVEACDKILKKCGGVPLAII 381
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 30.7 bits (66), Expect = 2.9
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 399 PQILLSPDECDRKFRNLKQTYIRLIERKRETGKNTKWPYFSYFEKIFDVPNQNARSVDNL 458
P +L ECD +R+ + +++ L + + EK+ D + S +
Sbjct: 643 PPLLHVGGECDHDYRSAECSHMNLAAPSPRVDQKALAGNLT--EKV-DTADGRTES-HHC 698
Query: 459 TIHEIKRVVQEMQDVRDTSKFDKLVQSMEESNMIQR 494
+ E + ++ E QD DT +FD + S E ++ I+R
Sbjct: 699 STQERRPILSEEQDTEDTIEFDTKLSSSEGASSIER 734
>03_05_0874 -
28429982-28430083,28430284-28430472,28430585-28430655,
28430754-28431021,28432579-28432818,28433791-28433979
Length = 352
Score = 30.7 bits (66), Expect = 2.9
Identities = 13/44 (29%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 271 RLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPPDCEKKFR 314
+++ +++ E++N++R + + KELW I+E N P +K+F+
Sbjct: 280 KIIEESFSEKVNQWRKRKRMFKELWDNITE----NSPKDQKEFK 319
>11_03_0084 +
9696368-9696554,9696648-9696718,9696821-9696901,
9697139-9697206,9697335-9697437,9700422-9700567,
9700686-9700803,9701693-9701797,9702333-9702434,
9702518-9702655,9703475-9703603,9703682-9703762,
9703883-9703957,9704861-9705028,9705125-9705242,
9705345-9705409,9705547-9705637,9705801-9705885,
9706006-9706084,9706317-9706414,9707029-9707137,
9707224-9707292,9707770-9707835,9707952-9708041,
9708416-9708526
Length = 850
Score = 29.9 bits (64), Expect = 5.0
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 252 ERIYYNSNPNTGPW----NRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPP 307
E + YN +P P+ ++ R +L + + L+K N Y K + E +
Sbjct: 752 EELMYNMSPEEIPFQVGMSKVDFRKMLKSSLSGLDKTINAMYRKLQKNITAEELLPSLWD 811
Query: 308 DCEKKFRNLKQTYIRIRSKVESGLAVTKWRYYKD 341
C+K+F + T++++ SK+ V KD
Sbjct: 812 KCKKEFLDKYATFLKLISKIYPSETVISVNEMKD 845
>08_02_0627 +
19449196-19449651,19449723-19449861,19450260-19450381,
19450685-19450888,19450981-19451040,19451628-19451820,
19451880-19451998,19452189-19452413,19452534-19452728
Length = 570
Score = 29.9 bits (64), Expect = 5.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 458 LTIHEIKRVVQEMQDVRDTSKFDKLVQS 485
+ + +I + QE+QD DT+ +DKL+QS
Sbjct: 277 MLVSKINGMRQEVQDALDTANYDKLLQS 304
>01_07_0255 -
42322111-42322308,42322658-42322750,42323127-42323344,
42323476-42323642,42324097-42324207,42324267-42324409,
42324492-42324710,42324975-42325055,42325202-42325381,
42325971-42326301,42326775-42326888,42327036-42327127,
42327631-42328059
Length = 791
Score = 29.9 bits (64), Expect = 5.0
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 55 HINEPPIIVQEHDSQPQEKVCS--TTKDVFWDRSKIRLLLKLCLEDRFKNINKQKTLWHD 112
H + P+I+ E +S + TKD+ R R+L + C F I K+KT H
Sbjct: 493 HSDGKPLIILERESSYIGTLIDDLVTKDL---REPYRMLTRKCRRGVFHFIKKEKTNTHT 549
Query: 113 IASHVGTT 120
I +H +T
Sbjct: 550 IRAHKPST 557
>11_01_0337 - 2519732-2521093
Length = 453
Score = 29.5 bits (63), Expect = 6.6
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 383 FRDPLIKKRTLWKKLSPQILLSPDECDRKFRNLKQTYIRLIERKRET-GKNTKWPYFSYF 441
+RD I+ LW S +L P CD ++ I+RK + Y
Sbjct: 156 YRD--IRSSFLWNPFSGAVLDLPSRCDDAAGGEPMCFVNAIKRKIVVCSPDLVAAAVEYT 213
Query: 442 EKIFDVPNQN---ARSVDNLTIHEI 463
IF +PN++ AR+ N+ H+I
Sbjct: 214 SLIFHLPNKHSSWARTNPNICCHDI 238
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 29.5 bits (63), Expect = 6.6
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 446 DVPNQNARSVDNL--TIHEIKRVVQEMQDVRDTSKFDKLVQSMEESNMIQRERNKIL 500
D+ N A + L T+HE++R V+E + ++ K+V EE+ +++RE+ +L
Sbjct: 952 DLENSKATEISKLQTTLHEMERRVEEARATQERESAKKVV---EEALVLEREKIALL 1005
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 29.5 bits (63), Expect = 6.6
Identities = 14/68 (20%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 83 WDRSKIRLLLKLC--LEDRFKNINKQKTLWHDIASHV-----GTTADECCKKYRNLRRTY 135
W ++++ L++L LE R+++ + LW DI++ + ++ C +K+ N+ + +
Sbjct: 319 WPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYF 378
Query: 136 IRLLKKNR 143
++ + N+
Sbjct: 379 KKVKESNK 386
>07_03_0271 - 16138605-16139072,16139174-16139327,16139465-16139934
Length = 363
Score = 29.1 bits (62), Expect = 8.7
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 251 FERIYYNSNPNTGPWNRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPPDCE 310
F+R + G NR + R ++ + KF +K+ WK I+E V P E
Sbjct: 184 FKRSFAEKRKLNGDTNRAQNRDREKLFLAKQEKFHGEA--EKQYWKAIAEMVPHEIPGLE 241
Query: 311 KKFRNLKQTYIRIRSKV-ESGLAVTK 335
K+ + ++ +K + G+ V +
Sbjct: 242 KRGKRREKQSAEANAKAKQPGVVVVQ 267
>01_03_0055 + 12074512-12076155
Length = 547
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 291 KKELWKEISETVGEN-----PPDCEKKFRNLKQTYIRIRSKVESGLA 332
KK WK +S + E+ P CE KF +L + Y R+ + G A
Sbjct: 165 KKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNKRYKRVVDLLGRGKA 211
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,090,889
Number of Sequences: 37544
Number of extensions: 637720
Number of successful extensions: 1461
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1455
Number of HSP's gapped (non-prelim): 22
length of query: 507
length of database: 14,793,348
effective HSP length: 85
effective length of query: 422
effective length of database: 11,602,108
effective search space: 4896089576
effective search space used: 4896089576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -