Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002261-TA|BGIBMGA002261-PA|IPR006578|MADF,
IPR009057|Homeodomain-like, IPR001005|Myb, DNA-binding
(507 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6) 38 0.019
SB_25596| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.019
SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.72
SB_15897| Best HMM Match : DUF134 (HMM E-Value=7.5) 31 1.7
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_34250| Best HMM Match : DUF1168 (HMM E-Value=1.3) 31 2.2
SB_45977| Best HMM Match : MBT (HMM E-Value=0) 31 2.9
SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.1
SB_34002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24) 29 8.8
>SB_36653| Best HMM Match : ACBP (HMM E-Value=3.6)
Length = 206
Score = 37.9 bits (84), Expect = 0.019
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 100 FKNINKQKTLWHDIASHVGTTADECCKKYRNLRRTYIRLLKKNRLGKEIK 149
FK+ NK++ W +A G + DE +K+ NLR Y + KN++ + K
Sbjct: 39 FKDKNKKENAWKQVAEQAGCSVDEAKRKFLNLRNRYSK--DKNKIKSKSK 86
Score = 37.1 bits (82), Expect = 0.033
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 369 VRQLLLFYIENVDKFRDPLIKKRTLWKKLSPQILLSPDECDRKFRNLKQTY 419
VR + Y +++ F+D KK WK+++ Q S DE RKF NL+ Y
Sbjct: 25 VRAFPVLYDKSIKDFKDKN-KKENAWKQVAEQAGCSVDEAKRKFLNLRNRY 74
Score = 35.1 bits (77), Expect = 0.13
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 277 YIERLNKFRNPRYLKKELWKEISETVGENPPDCEKKFRNLKQTYIRIRSKVES 329
Y + + F++ + K+ WK+++E G + + ++KF NL+ Y + ++K++S
Sbjct: 32 YDKSIKDFKD-KNKKENAWKQVAEQAGCSVDEAKRKFLNLRNRYSKDKNKIKS 83
>SB_25596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 37.9 bits (84), Expect = 0.019
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 100 FKNINKQKTLWHDIASHVGTTADECCKKYRNLRRTYIRLLKKNRLGKEIK 149
FK+ NK++ W +A G + DE +K+ NLR Y + KN++ + K
Sbjct: 39 FKDKNKKENAWKQVAEQAGCSVDEAKRKFLNLRNRYSK--DKNKIKSKSK 86
Score = 37.1 bits (82), Expect = 0.033
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 369 VRQLLLFYIENVDKFRDPLIKKRTLWKKLSPQILLSPDECDRKFRNLKQTY 419
VR + Y +++ F+D KK WK+++ Q S DE RKF NL+ Y
Sbjct: 25 VRAFPVLYDKSIKDFKDKN-KKENAWKQVAEQAGCSVDEAKRKFLNLRNRY 74
Score = 35.1 bits (77), Expect = 0.13
Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 277 YIERLNKFRNPRYLKKELWKEISETVGENPPDCEKKFRNLKQTYIRIRSKVES 329
Y + + F++ + K+ WK+++E G + + ++KF NL+ Y + ++K++S
Sbjct: 32 YDKSIKDFKD-KNKKENAWKQVAEQAGCSVDEAKRKFLNLRNRYSKDKNKIKS 83
>SB_30953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 32.7 bits (71), Expect = 0.72
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 202 DIWKEIALEIGTTEYNCYH-KFKNMKRAYLNWLERSKDTGKPIKWPYHHFFERIYYNSNP 260
+++ + +G T+ + ++ + + LNWL+ SK+ PYH F +Y NP
Sbjct: 51 ELFDRVCSFLGVTKKEIFGLQYTSWEDGALNWLDMSKEIRSQRSKPYHFQFAVKFYPRNP 110
Query: 261 -NTGPWNRTKIRLLLDAYIERLNKFRNPRYLKK 292
P +R + L + + R KF P +K+
Sbjct: 111 RELDPVSRELMCLQVKDSLVR-GKFLKPVSIKR 142
>SB_15897| Best HMM Match : DUF134 (HMM E-Value=7.5)
Length = 311
Score = 31.5 bits (68), Expect = 1.7
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 256 YNSNPNTGPWNRTKIRLLLDAYIER--LNKFRNPRYLKKE----LWKEISETVGENPPDC 309
+ PN G W+ +I L+ + E L R+ Y K++ +K ISE +G P+
Sbjct: 12 FRLRPNRG-WSSEEIEHLITLWREHEELYDLRHVDYPKRDRRRLAFKHISEQLGITVPEI 70
Query: 310 EKKFRNLKQTYIR 322
+KK NL+ Y +
Sbjct: 71 KKKMTNLRTYYTK 83
>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 420 IRLIERKRETGKNTKWPYFSYFEKIFDVPNQNARSVDNLTIHEIKRVVQEMQDVRDTSKF 479
I+ IE K+ + +N W +F Q +++ +E +R + ++ + S+
Sbjct: 679 IQEIETKKASLENECWRKAKIVLSLFSQREQQEMTLEMNRKNERERKLLREENKKLQSEI 738
Query: 480 DKLVQSMEESNMIQRERNKIL 500
DKL +S+E+S +QR+ + L
Sbjct: 739 DKLSESLEKSVAVQRKMEEEL 759
>SB_34250| Best HMM Match : DUF1168 (HMM E-Value=1.3)
Length = 642
Score = 31.1 bits (67), Expect = 2.2
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 212 GTTEYNCYHKFKNMKRAYLNWLERSKDTGKPIKWPYHHF 250
GT Y C H FKN Y+NW+ + G+ YH F
Sbjct: 56 GTARYICLHIFKNQIFQYINWI--AFVNGRHFSAGYHVF 92
>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
Length = 1198
Score = 30.7 bits (66), Expect = 2.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 259 NPNTGPWNRTKIRLLLDA-YIERLNKFR-NPRYLKKELWKEISETVGENPPDCEKKF 313
NP G WN+ L DA + R+++ N R+L+K W T PP+ F
Sbjct: 676 NPPNGAWNKPVRSLRKDAGRLGRIDRIGPNERFLQKSFWDGFPVTPPSPPPNSHCNF 732
>SB_39972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 29.9 bits (64), Expect = 5.1
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 203 IWKEIALEIGTTEYNCYH-KFKNMKRAYLNWLERSKDTGKPI-KWPYHHFFERIYYNSNP 260
++ ++ IG E + ++ + K NWLE + + + K P H +F +Y NP
Sbjct: 33 LFDQVCDHIGLAEKEYFGLRYIDEKDGQFNWLEGDRSIKRQMGKAPLHFYFAVKFYPENP 92
Query: 261 NTGPWNRTKIRLLL 274
T + T+ + +L
Sbjct: 93 TTLREDITRYQFVL 106
>SB_34002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 29.1 bits (62), Expect = 8.8
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 279 ERLNKFRNP-----RYLKKELWKEISETVGENPPDCEKKFRNLKQTYIRIRSKVESGLAV 333
E + K+RN R KE WK++S+ + NP +KF N + ++ ++K E+ +++
Sbjct: 231 ELMKKWRNEATRLRRKAIKEYWKQVSQDLNNNP----RKFFNTFKPFLSSKTKDETSISL 286
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 29.1 bits (62), Expect = 8.8
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 380 VDKFRDPLIKKRTLWKKLSPQILLSPDECDRKFRNLKQTYIRLIERKRETGKNTKWPYFS 439
V K RD L K L K+L L +++F ++ ++ E K + K +
Sbjct: 910 VGKLRDELANKEELMKELVQS--LEETRAEKEFER-RELLLQCEEHKMQISTLQKDLENN 966
Query: 440 YFEKIFDVPNQNARSVDNLTIHEIKRVVQEMQDVRDTSKFDK 481
+ + + A+ V+ + +K + MQ+++DT+ F+K
Sbjct: 967 VSAEEMEALRKAAKEVEE-ELQRVKEERESMQELKDTNDFEK 1007
>SB_22029| Best HMM Match : Copine (HMM E-Value=3.6e-24)
Length = 726
Score = 29.1 bits (62), Expect = 8.8
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 426 KRETGKNTKWPYFSYFEKIFDVPNQNARSVDNLTIHEIKRVVQEMQDVRDTSKFDKLVQS 485
KRE T + E+ F N NAR L ++ Q+ +R S +KLV
Sbjct: 454 KREEPNKTASVFSGSLERQFRAENANAREEIRLQKEKVSLEHQKRDRIRKISASEKLVVE 513
Query: 486 ME-ESNMIQRERNK 498
N++ R R++
Sbjct: 514 RHIRRNLVSRSRSE 527
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.136 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,579,061
Number of Sequences: 59808
Number of extensions: 834558
Number of successful extensions: 2218
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2206
Number of HSP's gapped (non-prelim): 18
length of query: 507
length of database: 16,821,457
effective HSP length: 85
effective length of query: 422
effective length of database: 11,737,777
effective search space: 4953341894
effective search space used: 4953341894
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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