GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002261-TA|BGIBMGA002261-PA|IPR006578|MADF,
IPR009057|Homeodomain-like, IPR001005|Myb, DNA-binding
         (507 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         26   2.7  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         26   2.7  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    25   3.6  
AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.          25   6.3  
AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.          25   6.3  
AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.          25   6.3  
AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.          25   6.3  

>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 275 DAYIERL-NKFRNPRYLKKELWKEISETVGENPPDCEKKFRNLKQTYIRIRSKVESGLAV 333
           +A ++RL N+F   RYL ++  + +S  +G N    +  F+N K+  I+  S  ++ LA+
Sbjct: 507 NAQLQRLKNEFNENRYLTEKRRQTLSAELGLNEAQIKIWFQN-KRAKIKKSSSEKNPLAL 565


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 275 DAYIERL-NKFRNPRYLKKELWKEISETVGENPPDCEKKFRNLKQTYIRIRSKVESGLAV 333
           +A ++RL N+F   RYL ++  + +S  +G N    +  F+N K+  I+  S  ++ LA+
Sbjct: 507 NAQLQRLKNEFNENRYLTEKRRQTLSAELGLNEAQIKIWFQN-KRAKIKKSSSEKNPLAL 565


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 376 YIENVDKFRDPLIKKRTLWKKLSPQILLSPDECDRKFRNLKQTY 419
           +   VDKF   ++K+R L K+   +++     C +K ++  + +
Sbjct: 288 FTRRVDKFEKCVVKRRQLMKQNEREVVEKSKSCFKKQQSQPEAF 331


>AY341205-1|AAR13769.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 121 ADECCKKYRNLRRTYIRLLKKNRLGKEIKWVHYNTCEEVFKECKSLPSSFLETWDDQKVR 180
           +D+  K+ + +    +RLLK+  + K    V     +EV K CK+L +SF+E   D+  +
Sbjct: 66  SDDTLKEAKMVEEQILRLLKEP-VAKPSDMVK----QEVSKRCKAL-ASFMEELMDEVAQ 119

Query: 181 KLLLLYIEN 189
             L L + N
Sbjct: 120 PELKLNLLN 128


>AY341204-1|AAR13768.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 121 ADECCKKYRNLRRTYIRLLKKNRLGKEIKWVHYNTCEEVFKECKSLPSSFLETWDDQKVR 180
           +D+  K+ + +    +RLLK+  + K    V     +EV K CK+L +SF+E   D+  +
Sbjct: 66  SDDTLKEAKMVEEQILRLLKEP-VAKPSDMVK----QEVSKRCKAL-ASFMEELMDEVAQ 119

Query: 181 KLLLLYIEN 189
             L L + N
Sbjct: 120 PELKLNLLN 128


>AY341203-1|AAR13767.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 121 ADECCKKYRNLRRTYIRLLKKNRLGKEIKWVHYNTCEEVFKECKSLPSSFLETWDDQKVR 180
           +D+  K+ + +    +RLLK+  + K    V     +EV K CK+L +SF+E   D+  +
Sbjct: 66  SDDTLKEAKMVEEQILRLLKEP-VAKPSDMVK----QEVSKRCKAL-ASFMEELMDEVAQ 119

Query: 181 KLLLLYIEN 189
             L L + N
Sbjct: 120 PELKLNLLN 128


>AY341202-1|AAR13766.1|  285|Anopheles gambiae period protein.
          Length = 285

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)

Query: 121 ADECCKKYRNLRRTYIRLLKKNRLGKEIKWVHYNTCEEVFKECKSLPSSFLETWDDQKVR 180
           +D+  K+ + +    +RLLK+  + K    V     +EV K CK+L +SF+E   D+  +
Sbjct: 66  SDDTLKEAKMVEEQILRLLKEP-VAKPSDMVK----QEVSKRCKAL-ASFMEELMDEVAQ 119

Query: 181 KLLLLYIEN 189
             L L + N
Sbjct: 120 PELKLNLLN 128


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,758
Number of Sequences: 2123
Number of extensions: 25370
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 8
length of query: 507
length of database: 516,269
effective HSP length: 67
effective length of query: 440
effective length of database: 374,028
effective search space: 164572320
effective search space used: 164572320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)