GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002261-TA|BGIBMGA002261-PA|IPR006578|MADF,
IPR009057|Homeodomain-like, IPR001005|Myb, DNA-binding
         (507 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X83973-1|CAA58807.1|  886|Homo sapiens transcription factor prot...    33   2.4  
BC127670-1|AAI27671.1|  461|Homo sapiens TTF1 protein protein.         33   2.4  
BC127669-1|AAI27670.1|  461|Homo sapiens TTF1 protein protein.         33   2.4  
AL353701-3|CAI94997.2|  905|Homo sapiens transcription terminati...    33   2.4  

>X83973-1|CAA58807.1|  886|Homo sapiens transcription factor
           protein.
          Length = 886

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 12/78 (15%)

Query: 257 NSNPNTGPWNRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPPDC-----EK 311
           +S  N G W++++ R L+ A  E + K  +P+ L     KE+   + ENP  C     EK
Sbjct: 661 SSQRNRGAWSKSETRKLIKAVEEVILKKMSPQEL-----KEVDSKLQENPESCLSIVREK 715

Query: 312 KFRNLKQTYIRIRSKVES 329
            ++ +  +++ + +KV++
Sbjct: 716 LYKGI--SWVEVEAKVQT 731


>BC127670-1|AAI27671.1|  461|Homo sapiens TTF1 protein protein.
          Length = 461

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 12/78 (15%)

Query: 257 NSNPNTGPWNRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPPDC-----EK 311
           +S  N G W++++ R L+ A  E + K  +P+ L     KE+   + ENP  C     EK
Sbjct: 217 SSQRNRGAWSKSETRKLIKAVEEVILKKMSPQEL-----KEVDSKLQENPESCLSIVREK 271

Query: 312 KFRNLKQTYIRIRSKVES 329
            ++ +  +++ + +KV++
Sbjct: 272 LYKGI--SWVEVEAKVQT 287


>BC127669-1|AAI27670.1|  461|Homo sapiens TTF1 protein protein.
          Length = 461

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 12/78 (15%)

Query: 257 NSNPNTGPWNRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPPDC-----EK 311
           +S  N G W++++ R L+ A  E + K  +P+ L     KE+   + ENP  C     EK
Sbjct: 217 SSQRNRGAWSKSETRKLIKAVEEVILKKMSPQEL-----KEVDSKLQENPESCLSIVREK 271

Query: 312 KFRNLKQTYIRIRSKVES 329
            ++ +  +++ + +KV++
Sbjct: 272 LYKGI--SWVEVEAKVQT 287


>AL353701-3|CAI94997.2|  905|Homo sapiens transcription termination
           factor, RNA polymerase I protein.
          Length = 905

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 12/78 (15%)

Query: 257 NSNPNTGPWNRTKIRLLLDAYIERLNKFRNPRYLKKELWKEISETVGENPPDC-----EK 311
           +S  N G W++++ R L+ A  E + K  +P+ L     KE+   + ENP  C     EK
Sbjct: 661 SSQRNRGAWSKSETRKLIKAVEEVILKKMSPQEL-----KEVDSKLQENPESCLSIVREK 715

Query: 312 KFRNLKQTYIRIRSKVES 329
            ++ +  +++ + +KV++
Sbjct: 716 LYKGI--SWVEVEAKVQT 731


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,031,987
Number of Sequences: 224733
Number of extensions: 3468355
Number of successful extensions: 7198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7198
Number of HSP's gapped (non-prelim): 4
length of query: 507
length of database: 73,234,838
effective HSP length: 93
effective length of query: 414
effective length of database: 52,334,669
effective search space: 21666552966
effective search space used: 21666552966
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)