GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002261-TA|BGIBMGA002261-PA|IPR006578|MADF,
IPR009057|Homeodomain-like, IPR001005|Myb, DNA-binding
         (507 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   2.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   2.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   6.0  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   6.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   6.0  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 462 EIKRVVQEMQDVRDTSKFDKLVQSMEE 488
           E+ RV++  +   + SK+DKL + +EE
Sbjct: 136 ELDRVLESPRGKYEFSKYDKLKKKLEE 162


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 462 EIKRVVQEMQDVRDTSKFDKLVQSMEE 488
           E+ RV++  +   + SK+DKL + +EE
Sbjct: 151 ELDRVLESPRGKYEFSKYDKLKKKLEE 177


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 101 KNINKQKTLWHDIASHVGTTADECCKKYRNLRRTYIRLLK 140
           +   K     +D+ SH     D  C+KY     TY+R+ K
Sbjct: 143 RGAGKSNITMYDLKSH----NDIYCEKYEKNGETYLRIKK 178


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 462 EIKRVVQEMQDVRDTSKFDKLVQSMEE 488
           E+ +V++  +   + SK+DKL + +EE
Sbjct: 39  ELDKVLESPRGKYEFSKYDKLKKKLEE 65


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 11/52 (21%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 334 TKWRYYKDFEEIYGHQTYCTTNNVKLVYKPNRDDYVRQLLLFYIE-NVDKFR 384
           T W +++  ++ Y HQ Y    ++       R++ ++ ++ F+++  +D FR
Sbjct: 178 TGWTFHEGRKQFYFHQFYKQQPDLNYRNSDVREE-MKNIMKFWLDKGIDGFR 228


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,375
Number of Sequences: 429
Number of extensions: 8719
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 507
length of database: 140,377
effective HSP length: 61
effective length of query: 446
effective length of database: 114,208
effective search space: 50936768
effective search space used: 50936768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)