GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002260-TA|BGIBMGA002260-PA|undefined
         (499 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   1.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   2.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   2.8  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   8.6  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   8.6  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 204 PSPCSSLPEAPTRPRLEESFT-IHLGS 229
           PSP  +L   P RP  + S+T  HLGS
Sbjct: 65  PSPRGALGAYPFRPMHQNSYTGYHLGS 91


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 374  VVFHLVADDSSLRSGDITSRHPVILGLRNILKAA 407
            +++ L  DD   R G+   RHP++  +RN+L  A
Sbjct: 1736 MIWALDLDDFKNRCGE--GRHPLLTTIRNVLADA 1767



 Score = 23.0 bits (47), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 87   PALETILQVENSYAKTVMNTLKNRDDDIVK 116
            P L TI +V   YAK     +  RD+D  K
Sbjct: 2180 PLLRTINRVLRGYAKPDPKCILGRDNDKTK 2209


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 322 EPVERRNTQRSKEQNDSNNTQTHNNPFRNR 351
           +P    N   +   N+SNN    NNP  NR
Sbjct: 368 QPSTSNNRWHNNNGNNSNNHWRKNNPNDNR 397


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 326 RRNTQRSKEQNDSNNTQTHNNPFRNRWRQNLQTGDIYLTKHSNLADVHVVFHLVADDSSL 385
           ++N+QR   Q  +NN    NN       QN      +   H   A  HVV H VA + SL
Sbjct: 299 KKNSQRQAAQQQNNNNAATNN-------QNHH----HHAGHHIHAQHHVVNHHVAANGSL 347

Query: 386 R 386
           +
Sbjct: 348 K 348


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 310 EYQLREISKKVKEPVERRNTQRSKEQNDSNNTQTHNNPFRNRWRQ--NLQTGDIYL-TKH 366
           E +  E S  V   VE    +  KE++DSNN   +NN       Q  N+  GD  L T H
Sbjct: 433 EEEDEETSTTVFSNVEVVQEEAKKEESDSNN---NNNKEEGNSCQYCNIAFGDAVLYTIH 489

Query: 367 SNLADVHVVF 376
                 H  F
Sbjct: 490 MGYHGFHNPF 499


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 402 NILKAACSNDITS-ISLPLLL 421
           N+L  AC +DIT+ + LP +L
Sbjct: 508 NVLAEACGSDITTRLLLPTVL 528


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,808
Number of Sequences: 317
Number of extensions: 4029
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 7
length of query: 499
length of database: 114,650
effective HSP length: 60
effective length of query: 439
effective length of database: 95,630
effective search space: 41981570
effective search space used: 41981570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)