Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002260-TA|BGIBMGA002260-PA|undefined
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0350 - 28179063-28179584,28179674-28180041,28180179-281802... 31 1.6
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 31 2.8
04_01_0261 + 3516461-3516629,3517729-3517823,3518724-3518834,351... 30 3.7
03_05_0308 - 22977542-22978174,22978202-22978387 30 3.7
01_06_1740 - 39575614-39576981 30 3.7
04_03_0240 - 13228046-13228170,13228247-13228307,13229301-132293... 30 4.9
02_04_0270 - 21439788-21441680 30 4.9
06_02_0105 - 11893666-11895483,11895661-11896422 29 8.6
03_05_0430 - 24206526-24207710 29 8.6
02_05_0876 - 32399066-32399920 29 8.6
01_06_0893 - 32766994-32768841,32769596-32769782,32769860-327699... 29 8.6
>02_05_0350 -
28179063-28179584,28179674-28180041,28180179-28180270,
28180366-28180412
Length = 342
Score = 31.5 bits (68), Expect = 1.6
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 98 SYAKTVMNTLKNRDDDIVKLTQKQTEE----MEEKVRLLNTSTTEVEINELATQQFEEQA 153
S++ + +K +D+++ + ++Q E+ M ++VR N + V A ++ E+A
Sbjct: 146 SFSDELAGQMKRQDEELDRFIKEQGEQLRRAMADRVRRHNRALL-VAAERSAARRLREKA 204
Query: 154 LVS---GRWGSQLDALCQTQRTHHRAWLMATLQEYQTTSALH 192
L + R G++L+ R+ AW L E +LH
Sbjct: 205 LEAEREARRGAELEERLARLRSEAAAWQAKALSEQAAAVSLH 246
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 30.7 bits (66), Expect = 2.8
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 50 VQKWEKLFKENVVEFAEQKGTPDEEVFAVAYHKLVHSPALETILQVENSYAKTVMNTLKN 109
++KWE+ + + + +EQK + E +KL +L+ + E N LK
Sbjct: 407 LKKWEESLQNDEKQLSEQKLQIENERKQAEMYKL-ELESLKATVVAEKEKILQEQNNLKL 465
Query: 110 RDDDI---VKLTQKQTEEMEEKVRLLNTSTTEVEINELATQQFEEQ 152
+++ + LT + +E++E N+ + E E Q+FEE+
Sbjct: 466 TEEERQEHIMLTAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEE 511
>04_01_0261 +
3516461-3516629,3517729-3517823,3518724-3518834,
3519179-3519213,3519864-3519954,3520124-3520196,
3521127-3521257,3524325-3524720
Length = 366
Score = 30.3 bits (65), Expect = 3.7
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 101 KTVMNTLKNRDDDIVKLTQKQTEEMEEKVRLLNTSTTEVE 140
K N K R++D+ KL +K+ E+ME+++R L E+E
Sbjct: 195 KKYENLTKKRNEDLAKL-KKEKEDMEKEIRGLRERIKELE 233
>03_05_0308 - 22977542-22978174,22978202-22978387
Length = 272
Score = 30.3 bits (65), Expect = 3.7
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 112 DDIVKLTQKQTEEMEEKVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDALCQTQR 171
DD + + ++ + ++ L T T++ + +L ++ E QA WGS++D+L Q
Sbjct: 13 DDFYEEALLEIDDQQRRLGELETEVTDLTVQQLQLEE-EHQA-----WGSEIDSLKFQQL 66
Query: 172 T---HHRAWLMATLQEYQTTSALH 192
+ + R +M TL+E S H
Sbjct: 67 SDQYNDRRGMMDTLEEQLRKSQEH 90
>01_06_1740 - 39575614-39576981
Length = 455
Score = 30.3 bits (65), Expect = 3.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 176 AWLMATLQEYQTTSALHTPSNSPLGIFSPSPCSSLPEAPTRPRL 219
++L A L+ + S TP ++P G P+P +++PE P PRL
Sbjct: 104 SYLPARLRRAEEGSHGRTPWSAPAG--HPAPPAAVPEEPQEPRL 145
>04_03_0240 -
13228046-13228170,13228247-13228307,13229301-13229368,
13229979-13230051,13230130-13230231,13231473-13231592,
13231795-13231913,13231990-13232047,13232152-13232208,
13232719-13232851,13233534-13233591,13234592-13234601,
13239996-13240961
Length = 649
Score = 29.9 bits (64), Expect = 4.9
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 114 IVKLTQKQTEEMEEKVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDALCQTQRTH 173
+ +++K+++ + E + +T ++E+N T E + + W + D + ++
Sbjct: 215 VYAISKKRSKSLREGIEN-DTWIDDLELNGNTTFTVELISQLVSLWSATQDIMLNQNKSD 273
Query: 174 HRAWLMATLQEYQTTSALHTPSNSPLGI-FSP 204
H W ++ EY +SA +G F+P
Sbjct: 274 HIVWKLSNHGEYSASSAYKAQCLGTVGTNFNP 305
>02_04_0270 - 21439788-21441680
Length = 630
Score = 29.9 bits (64), Expect = 4.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 189 SALHTPSNSPLGIFSPSPCSSLPEAPTR 216
S+ H+ S S G+ PSPC + P AP R
Sbjct: 15 SSFHSLSLSSRGLRVPSPCEARPRAPLR 42
>06_02_0105 - 11893666-11895483,11895661-11896422
Length = 859
Score = 29.1 bits (62), Expect = 8.6
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 291 TTQLVDAAKSSTEYHFHDVEYQLREISKKVKEPVERRNTQRS-KEQNDSNNTQTH 344
T V K +HF++ + LR++ +K P+ R N+ ++ + N +T TH
Sbjct: 174 TPAKVKEKKPHLMHHFNERQMSLRDMRQKAPAPLNRSNSGKNFRTDNTFVDTTTH 228
>03_05_0430 - 24206526-24207710
Length = 394
Score = 29.1 bits (62), Expect = 8.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 193 TPSNSPLGIFSPSPCSSLPEAPTRPRLEESF 223
+PS SP SP+P SLP +P RLE ++
Sbjct: 36 SPSPSPSPSASPAPPPSLPLSPFNERLEAAY 66
>02_05_0876 - 32399066-32399920
Length = 284
Score = 29.1 bits (62), Expect = 8.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 117 LTQKQTEEMEEKVRLLNTSTTEVEINELATQQFEEQALVSGRWGSQLDALCQTQRTHH 174
LT+ E + R L++ + ++ L T EE + G+W QLD+ QTQ H
Sbjct: 211 LTEMLDEYWKTDGRALSSVSLAKGLSLLGT---EEARFIEGKWRRQLDSEIQTQMRRH 265
>01_06_0893 - 32766994-32768841,32769596-32769782,32769860-32769987,
32770080-32770283,32770373-32770523,32771424-32771533,
32772534-32772903,32773031-32773189,32773719-32773848,
32773921-32773989,32774066-32774154,32774319-32774439,
32775878-32776148
Length = 1278
Score = 29.1 bits (62), Expect = 8.6
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 180 ATLQEYQTTSALHTPSNSPLGIFSPSPCSSLPEAPTRPRLEESFTI----------HLGS 229
A + T A+ PS++PL S P P L S T+ + S
Sbjct: 912 AAVLSVSQTPAISRPSSAPLFQVPRSTLPPTPAVQVPPMLSRSMTLAGRSRNEPSPSVPS 971
Query: 230 QLKQTHNIRIVAMDLLDLCNVDHDNPTESSRRLQTS--LSLYSSELSAVI 277
QT+ I+ LD + D+ T + + S LS Y+S SA++
Sbjct: 972 YTAQTYRNAIIGKSNLDTASASLDHSTSFGQNVALSQPLSSYASAASAMV 1021
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.129 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,744,575
Number of Sequences: 37544
Number of extensions: 490317
Number of successful extensions: 1623
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 14
length of query: 499
length of database: 14,793,348
effective HSP length: 85
effective length of query: 414
effective length of database: 11,602,108
effective search space: 4803272712
effective search space used: 4803272712
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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