GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002260-TA|BGIBMGA002260-PA|undefined
         (499 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   1.5  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 92   ILQVENSYAKTVMNTLKNRDDDIVKLTQKQTEEMEEKVRLLNTSTTEVEIN 142
            +L+ E    K VM   K  +DD  K+    T+  EEK + L  + +EV+ N
Sbjct: 988  LLEREEEQYKEVMRRKKVVEDDKKKIQAIITDLDEEKKKKLKVAWSEVDEN 1038


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.129    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 450,120
Number of Sequences: 2123
Number of extensions: 17425
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 1
length of query: 499
length of database: 516,269
effective HSP length: 67
effective length of query: 432
effective length of database: 374,028
effective search space: 161580096
effective search space used: 161580096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)